genome.fa.s8786.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008786.1 Hibiscus syriacus cultivar Beakdansim tig00111920_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  306639

Tables:   1   2   

This is table  2  of  2  ( 176 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224010--224268	18	14.7	18	64	24	65	42	8	6	41	1.63
224075--224161	18	4.7	19	66	17	67	44	8	5	41	1.58
224105--224255	72	2.0	76	89	6	238	43	7	7	41	1.61
224122--224276	72	2.1	67	77	18	166	43	9	6	40	1.62
224236--224327	24	3.4	28	69	21	88	39	8	7	44	1.64
224041--224340	162	1.9	155	85	7	415	41	8	7	42	1.64
224076--224354	51	5.2	52	72	15	187	41	8	6	43	1.62
224316--224389	37	2.0	37	81	5	87	43	6	2	47	1.44
224322--224457	53	2.7	50	76	18	138	44	8	3	42	1.53
224445--224620	7	29.0	6	64	25	52	47	5	3	43	1.43
224445--224620	18	10.1	18	73	13	127	47	5	3	43	1.43
224497--224786	58	5.1	58	71	18	205	43	7	6	42	1.60
224471--224620	71	2.2	68	87	3	219	46	5	4	44	1.45
224493--224769	33	8.5	33	74	13	252	43	7	6	42	1.59
224316--224620	2	148.0	2	64	25	70	46	6	3	43	1.48
224596--224778	58	3.0	61	88	8	264	42	8	7	41	1.64
224695--224742	25	1.9	25	86	0	69	43	8	6	41	1.60
224663--224821	51	3.0	52	80	12	128	44	8	5	41	1.59
224799--224852	26	2.2	24	79	17	67	46	3	0	50	1.19
224881--225017	61	2.2	61	86	8	190	46	5	9	37	1.61
225210--225533	113	2.9	112	88	4	492	27	27	7	37	1.83
225684--225727	11	3.9	11	80	16	54	40	36	2	20	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225744--225785	17	2.4	18	84	4	59	47	42	7	2	1.43
226065--226610	31	17.7	31	90	1	785	23	3	23	49	1.66
228592--228639	20	2.5	19	86	3	69	10	10	18	60	1.57
234540--234580	16	2.5	17	84	8	57	21	0	4	73	1.02
235642--235694	19	2.7	20	82	8	63	37	3	5	52	1.43
235660--235711	19	2.8	18	82	8	52	38	5	3	51	1.44
236393--236465	19	3.8	19	88	0	110	20	30	26	23	1.99
236554--236618	30	2.2	30	91	0	103	13	24	35	26	1.93
236747--236773	4	6.8	4	100	0	54	77	0	0	22	0.76
238162--238426	63	4.0	66	82	12	325	27	12	11	48	1.75
238162--238426	131	2.0	131	87	8	380	27	12	11	48	1.75
239796--239865	3	23.3	3	100	0	140	67	0	0	32	0.91
241727--241756	15	1.9	16	93	6	53	50	26	20	3	1.64
249464--249526	24	2.6	24	77	18	69	61	1	4	31	1.26
249576--249610	16	2.2	16	90	5	54	62	2	5	28	1.32
250738--250776	11	3.4	12	93	6	64	69	0	0	30	0.89
251103--251149	24	2.0	24	86	0	67	36	14	4	44	1.65
253097--253130	17	2.0	17	94	0	59	32	0	26	41	1.56
256366--256521	65	2.4	64	91	5	244	30	16	23	30	1.96
258079--258112	2	17.5	2	93	6	61	47	0	0	52	1.00
271490--271583	45	2.1	44	83	13	113	27	21	22	28	1.99
277372--277438	35	2.0	35	88	8	104	17	28	31	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278002--278157	31	5.0	31	92	1	242	20	18	21	39	1.93
281889--281959	35	2.0	36	97	2	135	16	30	30	21	1.95
282525--282665	31	4.5	31	90	0	219	19	17	21	40	1.91
284296--284465	65	2.6	65	96	1	306	30	17	22	29	1.97
296574--296618	22	2.0	23	82	8	56	42	2	2	53	1.25
297654--297679	2	13.0	2	100	0	52	50	0	0	50	1.00
299719--299750	16	1.9	17	93	6	57	37	12	25	25	1.91
304112--304153	3	14.7	3	90	9	70	69	0	0	30	0.89
304112--304153	11	3.7	11	96	3	75	69	0	0	30	0.89
304112--304153	14	2.9	15	89	10	70	69	0	0	30	0.89
304815--304849	8	4.4	8	96	0	61	48	17	0	34	1.47
305994--306027	16	2.1	16	94	0	59	50	26	0	23	1.50

Tables:   1   2

The End!