Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000879.1 Hibiscus syriacus cultivar Beakdansim tig00001712_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60434

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1622--1671
1
50.0
1
83
0
64
0
0
8
92
0.40
1615--1671
21
2.7
21
88
0
87
0
1
10
87
0.61
1622--1670
10
4.8
10
97
2
89
0
0
8
91
0.41
1986--2030
11
4.1
11
82
5
56
71
4
11
13
1.29
1986--2027
22
1.9
22
90
9
68
69
4
11
14
1.34
2418--2525
50
2.3
44
83
13
121
50
13
1
33
1.53
6207--6285
9
8.7
9
76
6
52
0
10
8
81
0.89
6199--6235
19
1.9
19
88
0
56
2
0
13
83
0.74
6232--6285
10
5.5
10
91
2
74
0
14
7
77
0.97
6601--6644
11
4.1
11
85
2
54
70
2
11
15
1.26
8189--8243
17
3.4
17
80
7
51
16
16
1
65
1.36
10291--10329
20
2.0
20
90
5
62
28
17
10
43
1.82
17776--17844
13
5.5
13
72
10
54
27
42
2
27
1.70
20979--21047
13
5.5
13
72
10
63
28
39
2
28
1.71
22042--22093
19
2.6
21
87
6
72
46
7
15
30
1.74
25355--25383
11
2.6
11
100
0
58
0
24
0
75
0.80
26066--26109
21
2.2
21
84
8
56
47
9
13
29
1.74
26066--26117
19
2.6
21
81
6
63
46
9
15
28
1.77
33141--33191
18
2.6
20
87
9
70
47
5
13
33
1.67
36490--36561
34
2.2
32
85
11
94
6
16
2
73
1.17
37264--37310
19
2.5
20
86
13
64
44
6
12
36
1.68
46276--46526
129
2.0
129
86
3
346
33
11
18
36
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52312--52372
10
5.5
11
83
14
81
88
6
4
0
0.63
52312--52379
13
5.2
13
79
13
68
85
8
5
0
0.75
52323--52379
19
2.9
19
81
2
60
85
8
5
0
0.72
52312--52372
1
61.0
1
83
0
59
88
6
4
0
0.63
58177--58217
18
2.3
18
91
0
64
2
29
26
41
1.69

Tables:   1

The End!