genome.fa.s8795.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008795.1 Hibiscus syriacus cultivar Beakdansim tig00111939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104940

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2861--2949	18	4.9	18	78	0	106	34	17	24	22	1.96
2850--2949	36	2.8	36	82	0	128	35	17	24	24	1.95
3995--4024	14	2.1	14	100	0	60	40	30	6	23	1.80
6492--6550	27	2.0	29	81	12	68	54	0	1	44	1.10
6885--6953	30	2.3	31	84	5	95	47	13	4	34	1.62
6897--6954	30	1.9	30	92	0	98	55	12	3	29	1.53
7478--7525	23	2.1	23	88	0	69	35	12	18	33	1.89
7893--7932	21	2.0	21	85	5	55	47	7	15	30	1.72
7935--7984	23	2.2	23	85	0	64	38	22	4	36	1.73
8321--8385	24	2.7	24	80	2	85	41	13	9	35	1.77
10837--11325	180	2.7	182	94	2	851	33	17	15	34	1.91
11365--11454	25	3.8	25	75	12	82	31	10	11	47	1.72
11374--11430	24	2.3	24	93	3	96	26	10	7	56	1.59
12865--12942	3	26.0	3	72	0	57	23	33	6	37	1.80
12869--12954	12	6.9	12	76	7	82	20	33	8	37	1.83
12865--12954	18	4.8	18	76	8	81	22	33	7	36	1.83
12878--12954	36	2.1	36	87	0	109	20	33	9	36	1.85
12869--12957	6	14.3	6	72	11	54	20	33	7	38	1.81
14534--14914	185	2.1	184	97	0	717	32	16	14	36	1.89
14718--15370	198	3.3	199	96	0	1182	30	16	15	37	1.90
15489--15537	19	2.6	19	86	0	71	55	10	4	30	1.52
17270--17316	23	2.0	23	100	0	94	34	48	0	17	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17351--17416	33	2.0	33	90	0	105	22	48	0	28	1.51
17450--17514	21	3.1	21	79	0	76	16	30	13	38	1.88
19741--19783	20	2.3	18	85	14	61	20	16	11	51	1.75
19746--19792	20	2.4	19	82	10	67	19	17	10	53	1.72
19926--19972	20	2.3	20	89	10	78	17	17	10	55	1.69
19713--20184	180	2.6	181	89	1	696	26	17	14	42	1.87
20251--20736	229	2.1	228	95	2	861	39	7	7	45	1.60
22479--22531	22	2.6	21	79	8	56	58	0	0	41	0.98
23103--23148	15	3.1	15	81	6	67	43	6	19	30	1.76
23306--23404	49	2.0	50	80	9	114	47	2	0	50	1.12
23545--23632	28	3.1	28	81	14	85	52	2	0	45	1.13
25977--26100	62	2.0	62	98	0	239	49	15	4	30	1.65
28644--28740	32	3.0	32	73	5	106	34	19	15	30	1.93
29909--29938	11	2.7	11	100	0	60	63	36	0	0	0.95
30045--30076	15	2.1	15	94	0	55	28	3	0	68	1.04
37601--37673	30	2.4	30	93	0	119	28	24	21	24	1.99
40842--40892	21	2.4	21	96	0	93	31	17	29	21	1.96
44413--44466	27	2.0	27	85	0	72	14	24	5	55	1.61
45163--45339	15	11.5	15	86	9	214	46	0	1	51	1.11
45319--46007	32	23.4	32	69	24	350	37	0	10	52	1.37
45342--45384	22	2.0	22	95	0	77	37	0	11	51	1.39
45319--45975	54	11.8	54	81	13	641	36	0	10	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45396--45438	22	2.0	22	95	0	77	41	0	6	51	1.29
45558--45600	22	2.0	22	100	0	86	34	0	13	51	1.42
45776--45984	18	12.8	15	66	24	86	39	0	7	53	1.30
45802--45846	22	2.0	22	95	0	81	44	0	6	48	1.29
46054--46112	31	1.9	31	92	0	100	44	8	6	40	1.61
50135--50193	29	2.0	31	93	6	104	47	6	13	32	1.69
52745--52780	3	12.0	3	100	0	72	0	33	0	66	0.92
54239--54263	13	1.9	13	100	0	50	72	0	0	28	0.86
54369--54444	3	25.7	3	97	2	145	34	0	0	65	0.93
68809--68848	14	3.1	13	82	10	55	60	0	0	40	0.97
70272--70305	15	2.3	15	90	5	52	38	0	2	58	1.13
70304--70382	3	26.3	3	94	0	140	63	0	2	34	1.08
70704--71505	230	3.5	227	88	4	1196	29	19	13	37	1.90
70703--71505	117	7.0	114	90	3	1139	29	19	13	37	1.90
70703--71505	347	2.3	341	88	4	1146	29	19	13	37	1.90
72146--72552	84	4.9	84	89	5	621	36	22	13	27	1.91
72146--72552	167	2.4	168	90	4	639	36	22	13	27	1.91
72506--72600	48	2.0	47	95	2	172	35	22	10	31	1.88
72422--72669	131	1.9	132	90	5	405	35	22	13	28	1.92
73395--73442	19	2.7	18	87	9	64	56	8	6	29	1.53
73771--73808	7	5.4	7	84	12	51	0	13	0	86	0.56
73779--73808	10	2.9	10	95	5	51	0	10	0	90	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73774--73805	11	2.8	11	95	4	55	0	9	0	90	0.45
84138--84204	16	4.3	15	69	7	53	68	2	2	25	1.18
86335--86368	15	2.3	15	90	5	52	38	0	2	58	1.13
86367--86495	3	43.3	3	95	1	233	65	0	1	33	1.02
90907--90962	2	28.0	2	100	0	112	50	0	0	50	1.00
94749--94862	57	2.0	57	94	0	201	35	14	15	34	1.89
98027--98100	34	2.2	35	85	9	109	43	5	4	47	1.45
98071--98114	21	2.0	22	91	8	72	36	4	0	59	1.18
101408--101460	26	1.9	26	85	11	70	43	0	0	56	0.99
101621--101674	17	3.2	16	78	2	54	37	0	3	59	1.15

Tables:   1

The End!