genome.fa.s8804.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008804.1 Hibiscus syriacus cultivar Beakdansim tig00111957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  529415

Tables:   1   2   3   

This is table  3  of  3  ( 290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409138--409195	25	2.2	28	87	12	95	82	1	10	5	0.89
409131--409189	17	3.5	17	79	9	66	83	1	11	3	0.85
409236--409316	24	3.4	24	93	3	137	40	13	25	19	1.89
410180--410754	136	4.2	135	85	3	690	34	15	21	28	1.94
410641--410821	96	1.9	96	81	4	222	29	20	17	32	1.96
411012--411064	24	2.3	22	78	18	54	47	39	3	9	1.54
412524--412555	10	3.2	10	90	0	55	9	0	3	87	0.64
412510--412559	12	4.5	11	82	12	57	10	0	10	80	0.92
421186--421221	17	2.1	17	100	0	72	19	44	25	11	1.83
421235--421304	29	2.4	30	88	4	99	40	5	12	41	1.67
422173--422339	42	4.0	41	93	3	271	19	25	24	31	1.98
428518--428586	29	2.3	29	85	2	84	34	2	18	43	1.65
429469--429635	42	4.0	41	89	3	253	18	25	23	32	1.97
433196--433478	122	2.3	121	86	3	381	26	12	25	35	1.91
434634--434697	6	10.2	6	79	12	58	3	12	1	82	0.85
434642--434684	17	2.6	16	82	7	50	2	11	0	86	0.67
441084--441236	77	2.0	79	85	7	215	42	3	10	43	1.57
445076--445116	17	2.4	18	84	11	52	36	14	19	29	1.92
449242--449294	11	5.3	10	82	10	56	81	15	3	0	0.83
456936--457043	32	3.4	32	86	0	135	22	33	21	23	1.97
462844--462904	32	1.9	32	86	0	86	21	32	19	26	1.97
466534--466563	5	6.0	5	92	0	51	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466528--466578	21	2.5	20	80	6	57	68	0	7	23	1.15
467286--467413	32	3.9	32	81	11	127	51	4	13	30	1.61
471748--471783	5	7.2	5	100	0	72	38	0	19	41	1.52
472206--472252	2	24.0	2	95	4	87	48	0	0	51	1.00
473462--473492	15	2.0	16	93	6	55	45	0	54	0	0.99
473463--473502	9	4.7	9	79	20	50	50	0	50	0	1.00
474559--474831	29	9.4	29	67	17	122	39	5	2	53	1.35
474708--474833	30	4.3	28	75	8	119	34	2	4	58	1.32
474708--474833	59	2.2	58	82	1	153	34	2	4	58	1.32
474868--474916	11	4.6	10	78	12	53	61	0	4	34	1.15
474917--474954	18	2.1	18	100	0	76	34	0	10	55	1.34
474923--474979	19	3.1	19	82	7	55	35	0	14	50	1.42
478008--478036	3	9.7	3	100	0	58	0	0	31	68	0.89
482277--482328	26	2.0	26	85	7	70	32	5	11	50	1.62
484788--484843	16	3.4	16	73	11	51	39	0	1	58	1.08
494493--494548	27	2.1	27	100	0	112	37	3	25	33	1.73
494830--494909	37	2.2	37	86	0	106	18	27	15	38	1.91
496486--496706	107	2.1	108	97	0	417	26	19	16	38	1.92
497551--498655	554	2.0	548	98	1	2156	24	14	19	41	1.89
507500--507792	82	3.6	81	79	3	293	34	17	18	30	1.94
507500--507800	42	7.3	42	81	4	317	35	16	17	29	1.93
508724--508991	37	6.9	38	80	13	269	47	3	8	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508718--508938	122	1.8	117	87	6	327	47	3	7	42	1.47
509004--509063	5	11.6	5	75	18	52	38	1	5	55	1.32
509004--509052	18	2.5	19	81	18	57	38	2	6	53	1.38
518117--518160	16	2.6	17	85	10	63	63	22	0	13	1.29
518120--518161	17	2.6	16	79	20	52	61	21	0	16	1.34
519539--519571	12	2.6	13	90	4	50	45	6	12	36	1.66

Tables:   1   2   3

The End!