genome.fa.s8832.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008832.1 Hibiscus syriacus cultivar Beakdansim tig00112023_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67441

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7179--7370	76	2.5	77	89	5	284	18	24	33	23	1.97
12976--13148	75	2.3	75	85	5	217	30	15	22	31	1.94
14499--14572	22	3.4	22	82	0	85	36	14	14	33	1.88
15246--15850	46	13.0	46	92	3	935	24	20	19	34	1.96
15246--15850	140	4.3	139	91	2	955	24	20	19	34	1.96
15493--15569	26	3.2	26	61	21	67	24	20	15	38	1.92
15246--15960	186	3.9	186	89	4	1002	24	21	19	34	1.96
15867--15960	45	2.1	45	100	0	188	23	24	19	32	1.97
17707--17743	18	2.1	19	85	10	51	45	0	0	54	1.00
19299--19349	24	2.1	24	85	10	68	43	1	11	43	1.52
20445--20484	2	20.0	2	100	0	80	50	0	0	50	1.00
23537--23658	3	40.0	3	85	3	163	60	2	0	36	1.10
23790--24655	76	11.4	76	96	1	1585	35	21	20	22	1.96
23790--24655	153	5.7	153	97	0	1591	35	21	20	22	1.96
25331--25385	22	2.5	22	93	0	101	40	14	10	34	1.81
27874--28055	83	2.2	83	91	2	294	35	18	14	31	1.91
37182--37315	3	44.0	3	86	3	187	61	2	0	36	1.09
54919--54989	19	3.8	17	72	18	52	71	2	5	19	1.18
54943--55012	30	2.4	31	80	15	78	75	0	5	18	0.99
54988--55026	19	2.0	20	85	5	53	71	2	5	20	1.17
56109--56134	7	3.7	7	100	0	52	88	11	0	0	0.52
56164--56384	38	5.9	38	83	6	245	46	5	1	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56297--56321	11	2.3	11	100	0	50	44	8	8	40	1.63
56400--56444	2	23.0	2	82	13	58	46	4	0	48	1.22
57007--58416	165	8.5	162	79	7	1368	24	19	25	30	1.98
57007--58416	84	17.0	83	78	8	1190	24	19	25	30	1.98
57007--58446	249	5.8	249	89	1	2059	24	19	25	30	1.98
60980--61020	18	2.3	18	91	8	66	2	29	24	43	1.67
61550--61608	30	2.0	30	93	6	102	35	3	16	44	1.65
61688--61786	21	4.7	21	79	12	105	24	36	18	21	1.95
61963--62002	20	1.9	21	85	10	55	37	37	10	15	1.80
63144--63191	19	2.5	20	82	3	62	52	6	12	29	1.63
64599--64697	21	4.8	20	83	10	119	22	35	20	22	1.96
64718--64805	20	4.3	20	82	2	113	19	27	22	30	1.98
66490--66593	23	4.7	22	85	5	106	19	25	32	23	1.97
66490--66599	44	2.5	42	80	8	139	20	25	30	23	1.98
66512--66593	23	3.7	23	91	4	132	19	24	32	23	1.97

Tables:   1

The End!