genome.fa.s8844.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008844.1 Hibiscus syriacus cultivar Beakdansim tig00112051_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  694789

Tables:   1   2   

This is table  2  of  2  ( 212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330753--330960	82	2.5	82	81	0	245	37	18	10	32	1.85
339654--339789	65	2.1	64	82	4	157	27	23	18	30	1.98
356364--356672	41	7.5	41	70	7	196	34	20	10	34	1.87
356360--356729	82	4.5	82	81	2	420	34	19	10	34	1.87
356371--356729	164	2.2	163	84	3	468	35	19	10	35	1.85
361800--361924	47	2.8	45	83	7	146	41	8	20	30	1.80
363915--363974	13	4.3	13	76	19	50	50	11	13	25	1.75
363905--363975	16	4.8	16	71	16	62	49	11	14	25	1.76
366934--366971	20	1.9	20	100	0	76	36	5	21	36	1.76
366936--366980	20	2.2	20	88	0	63	35	6	17	40	1.76
369084--369208	47	2.8	45	83	7	146	40	7	20	31	1.80
385540--385569	10	3.0	10	100	0	60	20	10	0	70	1.16
396906--396936	4	7.5	4	96	3	53	22	0	0	77	0.77
400700--400734	16	2.1	17	94	5	63	31	8	25	34	1.86
401484--401516	15	2.1	16	88	5	50	51	15	24	9	1.72
406706--406753	23	2.0	25	84	8	64	50	2	2	45	1.25
411631--411682	22	2.4	22	100	0	104	23	9	26	40	1.85
422868--423078	88	2.4	90	87	4	293	25	18	14	41	1.88
422868--423129	45	5.8	46	83	5	329	24	19	15	40	1.90
422868--423129	91	2.9	91	85	5	336	24	19	15	40	1.90
433514--433557	23	1.9	23	90	0	70	56	18	6	18	1.62
436536--436617	26	3.1	25	79	15	78	32	1	7	58	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436536--436589	13	4.3	12	77	13	56	33	1	1	62	1.16
436599--436640	22	2.0	21	90	4	66	42	0	2	54	1.13
453442--453535	45	2.1	45	86	4	127	25	19	7	47	1.75
454008--454698	59	11.7	59	91	0	1035	34	19	11	34	1.88
455642--455670	14	2.0	15	93	6	51	13	27	27	31	1.94
458115--458243	48	2.7	48	85	2	179	27	11	19	41	1.86
458115--458243	24	5.4	24	85	3	161	27	11	19	41	1.86
462795--462885	24	3.8	24	85	8	114	25	13	19	41	1.88
462810--462902	24	3.9	24	85	0	96	26	9	21	41	1.84
463871--464042	95	1.8	95	89	0	272	25	25	16	32	1.96
484398--484755	178	2.0	181	91	3	591	35	17	16	31	1.92
486815--486856	17	2.5	17	84	3	50	30	19	16	33	1.94
488431--488460	16	1.9	16	93	6	53	40	6	6	46	1.56
502735--502782	21	2.3	21	86	10	64	33	29	8	29	1.86
503155--503200	19	2.5	19	96	3	85	43	32	4	19	1.71
505389--505428	21	1.9	21	89	0	62	42	15	0	42	1.46
509180--509242	31	2.0	31	93	0	108	23	3	36	36	1.71
516614--516665	27	1.9	27	84	0	68	19	36	3	40	1.70
519710--519778	10	7.1	10	80	12	58	7	14	0	78	0.96
519714--519766	18	2.9	18	81	10	72	7	11	0	81	0.88
519725--519766	9	4.6	9	87	3	57	7	7	0	85	0.73
522108--522157	20	2.5	20	100	0	100	20	18	32	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522596--522772	45	3.9	45	90	0	273	31	21	6	41	1.78
524678--524744	30	2.2	30	83	0	80	29	14	11	43	1.82
527557--527590	11	3.1	11	100	0	68	44	0	0	55	0.99
528255--528332	39	2.0	39	100	0	156	30	25	15	28	1.96
531216--531271	18	3.1	17	78	14	51	78	1	14	5	1.00
539557--539674	51	2.3	51	85	1	146	35	5	9	49	1.59
554526--554802	137	2.0	135	86	2	376	25	13	17	43	1.86
556729--556761	15	2.2	15	100	0	66	27	30	0	42	1.56
559877--559915	21	1.9	20	84	5	51	33	23	15	28	1.95
571087--571111	12	2.1	12	100	0	50	56	28	0	16	1.41
573179--573246	28	2.4	28	80	11	77	54	4	7	33	1.48
574202--574233	3	10.7	3	100	0	64	34	0	0	65	0.93
579639--579692	22	2.6	21	80	13	58	35	14	20	29	1.93
580089--580244	81	1.9	80	83	3	197	34	12	22	30	1.91
580100--580274	81	2.2	80	80	6	183	35	13	21	30	1.91
581239--582263	511	2.0	511	95	0	1836	32	13	26	27	1.93
594908--594942	14	2.5	13	86	13	52	37	2	17	42	1.64
596542--596569	14	2.0	14	100	0	56	42	0	14	42	1.45
597050--597085	16	2.2	17	90	5	56	66	0	16	16	1.25
606738--606786	19	2.6	19	84	9	57	24	28	20	26	1.99
608414--608458	22	2.1	22	87	4	65	48	11	4	35	1.59
614851--614889	20	2.0	20	89	0	60	35	10	23	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619100--619324	61	3.7	61	85	0	306	30	21	15	32	1.95
619102--619324	122	1.8	122	92	0	374	30	21	15	32	1.94
621071--621131	20	3.0	20	100	0	122	24	14	26	34	1.94
625635--625672	19	2.0	19	94	0	67	39	15	10	34	1.82
635266--635317	20	2.6	21	84	9	72	30	15	32	21	1.94
635826--636158	45	7.9	45	73	16	273	33	12	24	29	1.91
635816--636158	124	2.8	123	89	1	499	34	11	24	29	1.91
641169--641386	34	5.4	43	69	24	170	34	11	26	27	1.91
641004--641386	78	4.9	78	88	1	545	36	11	24	27	1.90
642376--642464	45	2.0	45	90	0	142	28	24	11	35	1.90
642388--642485	45	2.2	45	84	0	124	26	21	11	40	1.87
642603--643061	68	6.8	68	83	0	515	30	23	15	30	1.95
642652--643061	136	3.0	135	88	0	568	30	23	16	30	1.96
643282--643497	58	3.7	57	88	1	315	35	19	11	33	1.87
647589--647695	45	2.4	45	87	0	142	28	21	9	40	1.84
647610--647698	45	2.0	45	93	0	151	28	24	11	35	1.90
647838--648296	68	6.8	68	88	1	650	30	24	15	29	1.95
648524--648731	57	3.6	57	85	2	274	36	17	10	36	1.84
648524--648731	115	1.8	115	88	2	319	36	17	10	36	1.84
649155--649210	20	2.8	20	81	10	69	23	32	16	28	1.96
654907--654994	40	2.2	40	95	0	158	35	19	13	31	1.91
654923--654994	20	3.6	20	68	20	60	36	19	12	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
654923--655003	20	4.1	20	65	17	51	35	19	12	32	1.89
669968--670045	22	3.9	20	77	14	63	24	35	23	16	1.95
692305--692350	18	2.5	18	89	10	67	0	32	23	43	1.54
693925--694014	23	4.0	22	80	7	92	17	25	32	24	1.97

Tables:   1   2

The End!