genome.fa.s8853.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008853.1 Hibiscus syriacus cultivar Beakdansim tig00112069_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  472107

Tables:   1   2   

This is table  2  of  2  ( 213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172243--172697	108	4.2	108	91	4	682	31	16	20	32	1.94
172665--172733	34	2.0	34	94	0	120	36	7	23	33	1.82
172707--172945	112	2.1	112	83	3	284	34	15	19	29	1.93
175722--176230	113	4.5	113	95	0	903	39	14	16	29	1.88
176135--176303	73	2.3	73	83	1	196	34	16	17	31	1.92
176022--176356	186	1.8	185	86	0	490	37	15	17	29	1.90
176210--176568	113	3.2	113	86	1	488	37	15	18	28	1.91
175909--176529	299	2.1	299	85	0	814	37	14	17	30	1.90
176022--176416	186	2.1	186	83	0	486	37	15	16	30	1.91
176532--176600	36	1.9	36	94	2	122	47	14	21	15	1.81
176836--176880	6	6.7	7	80	14	51	31	2	0	66	1.04
176848--176896	3	16.0	3	82	4	62	32	2	2	63	1.17
178503--178544	20	2.2	19	86	4	57	33	0	2	64	1.07
178399--178631	120	2.0	117	83	5	299	37	7	8	45	1.64
179336--179376	21	2.0	21	86	13	59	51	0	0	48	1.00
181281--181338	22	2.6	22	100	0	116	18	22	41	17	1.90
181670--181733	25	2.5	26	90	7	105	28	34	0	37	1.57
189554--189600	23	2.0	24	87	4	69	42	10	2	44	1.51
191114--191161	25	2.0	25	83	4	62	43	8	6	41	1.60
191676--191733	27	2.1	27	90	0	89	51	10	1	36	1.46
193787--193837	14	3.6	14	79	12	52	27	5	0	66	1.14
199470--199680	80	2.6	82	88	3	304	43	34	4	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204519--204576	23	2.5	23	100	0	116	27	12	27	32	1.92
206232--206267	16	2.3	16	90	4	56	52	0	0	47	1.00
206181--206358	90	2.0	90	92	0	293	39	10	5	44	1.62
218841--218920	40	2.0	40	82	4	99	27	23	26	22	2.00
224199--224382	45	4.2	44	79	5	201	34	14	24	26	1.94
229844--229884	17	2.4	17	100	0	82	9	17	19	53	1.70
244676--244721	24	1.9	24	100	0	92	30	13	15	41	1.85
264209--264243	17	2.1	17	100	0	70	42	17	5	34	1.73
265912--265945	17	2.0	17	88	11	52	2	23	5	67	1.26
268679--268777	23	4.3	23	88	0	144	32	19	1	47	1.56
279984--280029	21	2.2	21	92	0	74	41	0	8	50	1.33
280544--281276	153	4.7	155	82	7	792	47	5	17	28	1.71
284974--285439	159	2.9	157	83	7	573	46	4	18	29	1.70
286162--286194	14	2.4	14	90	5	50	27	0	18	54	1.44
286818--286846	2	14.5	2	100	0	58	51	0	0	48	1.00
293756--293840	44	2.0	42	88	8	129	38	9	20	31	1.84
293876--294097	116	1.9	116	83	3	286	28	20	11	39	1.88
297878--297924	18	2.5	20	82	6	62	46	2	6	44	1.40
299426--299513	27	3.3	27	95	0	149	27	20	26	26	1.99
299908--299972	29	2.2	29	94	0	112	18	0	30	50	1.47
300810--300844	12	2.9	12	100	0	70	17	5	0	77	0.96
302083--302123	18	2.4	17	87	4	55	36	7	4	51	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307189--307218	14	2.1	14	93	0	51	30	23	6	40	1.80
313428--313536	18	5.8	18	80	10	101	33	30	19	17	1.95
325256--325306	23	2.3	23	80	6	61	19	43	19	17	1.89
325288--325327	21	1.9	21	89	0	62	25	40	25	10	1.86
327259--327309	9	6.2	8	76	19	52	13	0	27	58	1.36
327261--327304	17	2.6	17	85	7	63	13	0	29	56	1.38
331304--331353	19	2.5	20	77	3	57	40	20	4	36	1.71
334588--334635	20	2.4	20	89	0	69	31	14	16	37	1.89
334665--334734	19	3.6	20	75	5	63	35	17	7	40	1.77
338693--338769	29	2.6	30	77	10	77	33	23	5	37	1.77
340614--340691	38	2.1	38	90	0	120	20	23	16	39	1.92
343976--344000	13	1.9	13	100	0	50	44	16	16	24	1.86
345620--345650	16	1.9	16	93	0	53	67	3	16	12	1.35
349114--349159	22	2.1	22	95	0	83	23	30	15	30	1.95
356742--356786	22	2.0	22	100	0	90	44	20	13	22	1.85
360194--360337	73	2.0	73	91	0	234	27	18	13	40	1.87
361400--361438	20	2.0	20	89	0	60	46	23	5	25	1.73
364734--364771	20	2.0	20	84	5	51	31	7	2	57	1.41
373518--373557	20	2.0	20	100	0	80	30	25	20	25	1.99
381052--381099	21	2.3	21	88	0	78	37	12	16	33	1.86
381112--381290	93	1.9	94	82	1	225	39	12	20	27	1.89
381632--382116	54	9.0	54	88	2	690	32	11	16	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381632--382116	215	2.2	216	88	1	706	32	11	16	40	1.84
385913--385946	14	2.4	14	95	0	59	38	20	14	26	1.91
386005--386069	18	3.5	18	91	4	94	27	7	33	30	1.85
387979--388017	19	2.1	19	95	0	69	41	15	12	30	1.85
388355--388721	107	3.4	108	91	1	603	33	11	16	38	1.85
388355--388721	54	6.8	54	93	1	603	33	11	16	38	1.85
388352--388721	161	2.3	161	94	0	643	33	11	16	38	1.85
388352--388784	161	2.7	160	88	3	602	32	11	17	38	1.86
400803--400835	12	2.8	12	95	0	57	51	18	6	24	1.68
405883--405934	26	2.0	26	92	0	86	25	17	28	28	1.97
406818--406854	17	2.1	18	90	5	58	27	13	0	59	1.35
417332--417360	2	15.0	2	92	7	51	51	0	0	48	1.00
417954--417998	13	3.5	13	84	0	54	33	17	13	35	1.89
429256--429307	22	2.2	24	86	6	72	42	32	0	25	1.55
430374--430449	36	2.1	36	95	0	134	43	13	10	32	1.78
435356--435431	36	2.1	36	97	0	143	43	14	10	31	1.79
441061--441095	18	1.9	18	88	0	52	37	8	2	51	1.47
441445--441501	29	1.9	30	85	3	80	15	15	21	47	1.82
444540--444604	31	2.1	31	94	0	112	46	12	21	20	1.83
446227--446257	15	2.1	15	93	0	53	58	25	3	12	1.50
447394--447470	37	2.1	36	85	4	102	38	20	3	36	1.71
449493--449553	33	1.9	31	83	6	77	36	3	0	60	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449480--449556	29	2.6	29	75	19	79	37	2	0	59	1.11
450906--450965	27	2.2	28	82	8	79	35	3	1	60	1.23
461589--461629	3	13.7	3	100	0	82	65	0	0	34	0.93
470313--470368	24	2.3	24	96	0	103	28	17	14	39	1.89
470764--470799	18	2.1	18	89	5	56	66	0	0	33	0.92

Tables:   1   2

The End!