genome.fa.s8856.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008856.1 Hibiscus syriacus cultivar Beakdansim tig00112075_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  559779

Tables:   1   2   3   

This is table  2  of  3  ( 350 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265563--265654	19	5.4	18	69	24	74	46	27	17	8	1.77
265580--265638	14	3.9	14	72	20	55	47	27	16	8	1.76
265650--265788	19	7.6	19	79	10	137	10	19	25	45	1.81
265650--265788	51	2.6	54	83	10	160	10	19	25	45	1.81
267706--267742	14	2.6	14	82	0	56	35	0	21	43	1.53
267876--268136	19	14.7	19	77	18	285	14	21	17	45	1.84
267882--268150	105	2.6	104	90	4	409	14	21	17	46	1.83
267882--268150	52	5.1	52	87	6	391	14	21	17	46	1.83
270627--270673	24	2.0	24	87	8	69	38	21	14	25	1.92
271365--271613	20	12.4	20	87	1	259	18	17	26	37	1.93
271581--271679	42	2.4	43	77	11	100	22	18	22	37	1.94
273930--274039	46	2.3	46	81	9	116	32	12	22	31	1.92
274427--274521	21	4.5	21	93	2	147	46	21	21	11	1.82
278303--278337	17	2.1	18	89	10	56	48	0	28	22	1.51
279157--279667	37	13.8	37	77	9	463	35	21	18	24	1.96
279157--279667	153	3.4	153	86	6	651	35	21	18	24	1.96
279454--279516	31	2.0	31	96	0	117	38	19	17	25	1.93
279161--279667	79	6.9	71	73	12	396	34	21	18	24	1.96
279680--280280	54	11.0	55	85	5	661	34	18	24	23	1.96
279679--280280	112	5.5	110	84	5	656	34	18	24	23	1.96
282060--282230	87	2.0	87	96	0	315	20	21	15	42	1.89
282927--283042	21	5.6	21	84	7	139	31	24	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282927--283061	41	3.3	41	88	5	175	31	22	22	22	1.98
282989--283061	20	3.6	20	79	17	96	35	19	21	23	1.96
282947--283107	62	2.5	62	81	13	161	32	21	21	24	1.98
283007--283123	21	5.4	21	71	17	96	35	22	19	23	1.96
282989--283078	41	2.2	41	93	0	153	36	20	20	23	1.95
283733--283832	6	17.5	6	98	1	165	0	17	53	30	1.44
283930--284002	20	3.6	20	77	17	87	24	21	17	35	1.95
283925--284006	41	2.0	41	97	0	155	25	21	18	34	1.96
283949--284064	21	5.6	20	82	10	92	21	21	25	31	1.98
283930--284064	41	3.3	41	84	5	148	22	21	22	32	1.98
289010--289066	3	19.0	3	100	0	114	66	0	0	33	0.92
292590--292648	21	2.8	21	78	2	64	22	22	30	25	1.99
296019--296083	31	2.1	31	97	0	121	24	24	9	41	1.84
296163--296209	14	3.3	14	77	11	51	27	0	23	48	1.51
296435--296475	19	2.1	20	86	4	57	53	14	0	31	1.41
296490--296538	14	3.5	14	97	0	89	57	0	8	34	1.29
296469--296680	112	1.9	109	80	9	241	59	4	2	33	1.33
296520--296680	56	2.9	56	92	0	268	60	3	1	34	1.25
300387--301199	209	3.8	211	89	2	1161	51	8	10	29	1.66
300387--301199	425	1.9	427	87	4	1216	51	8	10	29	1.66
301225--301554	2	165.0	2	63	21	79	46	3	5	44	1.44
301225--301317	22	4.3	23	78	13	99	48	2	3	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301226--301325	25	4.2	24	73	11	71	47	2	4	47	1.32
301411--301531	11	10.6	11	67	16	68	47	1	3	47	1.28
301450--301551	24	4.0	25	75	16	95	46	0	3	50	1.20
301558--301616	7	8.4	7	76	0	64	18	0	37	44	1.50
301558--301616	21	2.8	21	86	0	73	18	0	37	44	1.50
301639--301801	22	7.4	20	75	18	146	38	6	1	53	1.37
301652--301802	23	6.7	23	75	19	149	37	5	1	54	1.36
301641--301802	45	3.6	45	97	0	306	38	6	1	53	1.37
301760--301844	33	2.7	32	83	8	104	43	7	4	44	1.52
301859--301974	18	6.2	18	75	17	103	41	8	6	43	1.62
301858--301966	35	2.9	35	82	14	121	40	8	6	44	1.60
301921--302088	55	3.1	53	81	10	160	42	7	7	42	1.61
301972--302085	20	5.9	19	68	12	63	42	7	7	43	1.58
301841--301995	77	2.1	75	81	7	190	41	7	7	43	1.62
302024--302100	2	37.0	2	73	21	61	46	5	2	45	1.39
301921--302096	57	3.1	57	81	8	175	43	7	6	42	1.60
302156--302213	17	3.4	17	73	4	62	43	3	6	46	1.47
302148--302373	33	6.4	35	72	18	175	43	7	6	42	1.59
302188--302246	17	3.6	16	68	22	50	42	6	5	45	1.52
302203--302385	51	3.5	51	80	10	231	43	7	6	42	1.59
302250--302371	58	2.1	58	87	0	181	42	9	8	40	1.66
302345--302382	18	2.1	18	95	0	67	50	2	5	42	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302456--302577	34	3.8	33	68	21	91	50	4	8	37	1.52
302437--302578	61	2.3	61	82	2	178	49	4	9	36	1.56
305640--305678	20	2.0	20	84	0	51	48	2	0	48	1.15
305811--305897	16	5.4	16	91	0	138	43	12	24	19	1.85
310407--310542	62	2.2	64	86	2	186	24	20	19	36	1.95
311063--311092	16	1.9	15	93	6	51	63	0	36	0	0.95
312236--312308	17	4.2	17	72	8	58	27	8	16	47	1.74
312258--312416	37	4.3	37	81	7	164	29	7	17	45	1.76
312255--312416	77	2.2	72	85	6	218	29	7	17	46	1.75
312334--312507	95	1.9	91	83	9	226	31	9	14	44	1.77
312429--312640	36	5.9	35	86	6	262	27	6	17	48	1.72
312473--312646	18	9.6	18	69	19	103	26	5	19	48	1.69
312642--312681	19	2.1	19	85	0	53	27	10	27	35	1.89
312650--312690	19	2.2	19	90	0	64	31	9	26	31	1.89
313495--313590	36	2.7	36	100	0	192	30	12	18	38	1.88
313495--313626	36	3.7	36	90	6	180	29	12	18	38	1.89
313564--313656	36	2.6	36	91	3	143	29	10	19	40	1.85
322223--322421	36	5.9	35	67	19	136	27	17	13	41	1.87
322239--322537	66	4.5	66	82	5	336	28	17	14	40	1.88
332756--332818	29	2.1	28	85	8	81	30	14	7	47	1.72
335797--335989	59	3.3	59	82	11	245	31	24	17	26	1.97
338867--338943	18	4.3	18	71	9	59	27	6	19	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338884--339118	37	6.4	36	83	6	294	28	5	18	47	1.72
338884--339118	109	2.1	110	86	4	332	28	5	18	47	1.72
339123--339206	36	2.3	35	81	4	87	34	11	13	40	1.81
347040--348513	134	10.8	133	79	5	1408	29	23	17	28	1.97
347838--347879	21	2.0	21	100	0	84	28	33	4	33	1.78
348687--348737	3	17.3	3	84	11	70	35	0	0	64	0.94
348799--348857	23	2.6	23	86	2	75	38	30	15	15	1.88
353333--353394	32	2.0	32	90	3	99	37	9	11	41	1.74
368759--368804	25	1.9	24	86	8	67	69	0	2	28	1.00
371629--371673	10	4.6	10	80	5	56	66	0	0	33	0.92
373074--373293	48	4.7	48	88	5	312	33	22	7	36	1.82
373074--373293	94	2.4	95	87	6	310	33	22	7	36	1.82
377197--377280	9	9.3	9	79	7	55	4	16	0	78	0.91
377206--377273	26	2.6	25	79	9	73	5	19	0	75	1.01
377236--377294	27	2.2	26	82	11	66	10	6	0	83	0.82
377534--377739	106	1.9	106	94	0	358	39	21	11	27	1.88
379166--379247	17	4.8	17	93	0	146	25	20	6	47	1.73
379566--379784	48	4.7	48	87	5	292	34	21	6	38	1.79
379566--379784	94	2.4	93	84	7	286	34	21	6	38	1.79
383840--383902	3	20.7	3	80	9	74	1	26	1	69	1.06
383833--383902	31	2.4	28	80	15	79	2	25	1	70	1.10
383830--383918	6	13.8	6	71	17	63	3	22	1	73	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383833--383904	28	2.4	29	81	6	92	2	25	1	70	1.08
383838--383923	43	2.0	44	84	9	113	3	23	1	72	1.07
383897--383923	13	2.1	13	100	0	54	7	14	0	77	0.97
389096--389144	22	2.1	24	85	7	66	12	12	28	46	1.77
389515--390018	91	5.5	91	87	1	697	26	21	13	38	1.91
390990--391063	19	3.7	19	81	12	69	5	13	1	79	0.96
390988--391073	5	17.2	5	76	17	72	4	15	1	79	0.96
390990--391067	30	2.7	30	86	11	101	5	12	1	80	0.93
390996--391066	25	2.7	26	81	16	83	5	11	1	81	0.91
391001--391080	21	3.7	22	70	13	51	5	13	1	80	0.95

Tables:   1   2   3