genome.fa.s887.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000887.1 Hibiscus syriacus cultivar Beakdansim tig00001732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  662576

Tables:   1   2   3   4   

This is table  1  of  4  ( 432 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4202--4241	13	3.0	13	92	3	62	77	0	15	7	0.98
4203--4271	13	4.8	14	81	15	61	81	0	15	2	0.81
4204--4271	11	5.9	11	81	10	66	82	0	14	2	0.79
4220--4277	20	3.0	19	82	9	73	84	0	13	1	0.70
4208--4278	14	5.0	14	80	10	65	81	0	15	2	0.80
4222--4277	15	3.9	15	75	15	55	83	0	14	1	0.72
5412--5591	82	2.1	86	88	6	269	30	13	21	35	1.92
6383--6938	113	5.0	113	95	0	949	38	14	18	28	1.90
7262--7373	3	37.3	3	92	0	179	33	4	0	61	1.16
16016--16076	32	1.9	32	89	0	95	22	42	22	11	1.86
25354--25412	30	1.9	30	89	3	91	35	13	5	45	1.66
26137--26186	20	2.5	20	87	6	66	28	10	18	44	1.81
26219--26268	20	2.5	20	93	0	91	32	30	12	26	1.92
27748--27833	31	2.8	31	94	0	145	26	15	10	47	1.77
32257--32300	22	2.0	23	86	4	63	59	0	4	36	1.18
32539--32581	23	1.9	23	85	4	61	41	0	4	53	1.21
44862--45086	20	11.1	20	73	7	193	16	20	22	40	1.92
44880--45075	41	4.8	41	92	2	324	17	20	22	38	1.93
44900--45014	21	5.6	21	72	4	117	20	19	25	35	1.95
44835--45122	61	4.7	60	76	9	262	18	19	21	39	1.92
45214--45264	6	8.5	6	100	0	102	33	50	15	0	1.44
45750--45786	5	7.6	5	96	3	67	0	40	21	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45783--45807	6	4.2	6	100	0	50	0	16	48	36	1.46
46255--46311	30	2.0	28	86	6	78	26	17	8	47	1.77
49753--49789	19	1.9	19	94	0	65	40	8	32	18	1.80
50825--51104	58	4.9	58	89	3	404	45	18	6	30	1.75
50825--51104	113	2.4	116	89	2	413	45	18	6	30	1.75
50976--51067	29	3.2	29	62	11	71	43	19	6	30	1.76
51661--51698	20	1.9	20	88	0	58	21	10	7	60	1.54
54935--55202	58	4.7	58	90	2	407	43	17	7	31	1.76
54914--55202	114	2.5	115	88	4	413	43	18	6	30	1.76
62435--62586	74	2.1	74	92	5	254	36	18	19	26	1.94
63314--63451	68	2.0	68	100	0	276	34	24	10	30	1.89
67040--67090	23	2.3	22	83	6	59	43	9	0	47	1.36
67047--67097	23	2.3	21	80	12	57	39	11	0	49	1.40
69452--69590	71	2.0	71	100	0	278	37	19	10	32	1.86
72619--72676	17	3.4	17	79	13	64	17	10	43	29	1.82
72618--72668	18	2.9	17	86	11	68	17	11	37	33	1.86
76734--76778	23	2.0	23	86	0	63	26	26	26	20	1.99
77376--77413	20	1.9	20	88	0	58	10	31	34	23	1.89
77440--77482	21	2.0	21	81	0	50	16	25	25	32	1.96
83514--83558	23	2.0	23	86	0	63	26	26	26	20	1.99
84254--84296	21	2.0	21	86	0	59	16	25	27	30	1.97
90951--91038	33	2.7	31	80	16	106	37	23	13	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95652--95734	33	2.5	35	82	9	109	42	25	8	24	1.82
106061--106175	22	5.8	18	79	8	86	28	27	20	22	1.99
106060--106177	38	2.9	39	80	7	130	27	27	20	23	1.99
106077--106177	22	4.9	22	79	10	124	28	27	20	22	1.99
106375--106432	24	2.5	21	75	25	55	32	22	5	39	1.76
110955--111005	25	2.0	25	81	7	59	66	1	5	25	1.24
113270--113323	10	5.1	10	80	12	63	62	20	9	7	1.48
113276--113331	23	2.5	22	85	8	76	62	21	8	7	1.48
115162--115326	75	2.2	75	87	0	240	25	21	19	33	1.97
115276--115381	53	2.0	53	90	0	167	28	18	22	30	1.98
115203--115455	128	2.0	128	83	4	323	27	20	23	29	1.99
115642--115692	3	17.0	3	100	0	102	33	0	0	66	0.92
127794--127841	24	1.9	26	87	8	73	37	4	20	37	1.72
127793--127847	24	2.2	26	80	6	69	43	3	20	32	1.69
128185--128226	22	1.9	22	85	9	59	23	0	7	69	1.13
128508--128749	20	11.8	20	82	11	294	35	27	19	17	1.94
128508--128747	62	3.9	62	86	9	330	35	27	19	17	1.94
128506--128756	40	6.1	40	90	4	360	37	26	19	17	1.93
128852--128900	6	8.5	6	97	2	84	30	53	16	0	1.43
129523--129780	20	12.8	20	82	10	276	16	21	23	38	1.93
129521--129780	60	4.3	59	85	9	328	16	21	23	38	1.92
137476--137536	20	2.9	20	85	7	59	24	32	26	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139190--139218	12	2.4	12	100	0	58	27	31	41	0	1.56
142067--142154	24	3.7	23	92	3	122	23	19	21	35	1.96
142089--142153	12	5.3	13	67	14	57	23	18	23	35	1.96
143184--143220	18	2.1	18	89	0	56	54	5	18	21	1.64
143317--143373	16	3.6	15	76	9	60	36	5	1	56	1.32
144699--144739	17	2.7	15	82	17	57	4	14	34	46	1.66
144692--144750	18	3.3	18	72	25	61	3	15	30	50	1.60
147656--147695	5	7.8	5	97	2	71	17	0	2	80	0.83
150890--150944	27	2.0	27	100	0	110	49	18	14	18	1.80
152690--152776	34	2.6	34	98	0	165	32	13	19	34	1.91
158878--158920	23	1.9	22	85	4	59	48	0	6	44	1.29
160528--160603	3	26.7	3	76	12	63	61	1	0	36	1.04
160911--161569	113	5.6	118	87	5	698	28	18	13	40	1.88
161146--161594	113	4.0	113	92	1	731	29	17	13	39	1.88
162749--162783	18	1.9	18	100	0	70	57	0	5	37	1.23
163136--163193	21	3.0	19	78	11	64	6	20	0	72	1.07
163155--163197	22	2.0	21	86	13	61	4	23	0	72	1.04
173739--173772	2	17.0	2	93	0	59	52	0	0	47	1.00
175945--176008	3	22.7	3	81	15	75	67	0	0	32	0.91
182607--182641	16	2.2	16	89	0	52	65	0	2	31	1.07
183097--183192	21	4.7	21	71	14	83	26	21	22	29	1.99
183097--183225	61	2.1	61	91	0	204	26	22	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183157--183205	21	2.5	20	86	6	64	28	18	22	30	1.97
183195--183319	21	6.0	21	85	1	171	25	27	18	28	1.98
183117--183309	61	3.2	60	82	6	194	26	23	19	29	1.98
183195--183322	62	2.1	62	93	0	220	25	26	17	29	1.98
183771--183822	16	3.1	17	78	13	63	36	0	3	59	1.16
183978--184122	21	6.9	21	87	0	191	31	17	25	24	1.97
184125--184294	21	8.1	21	79	10	120	30	21	22	25	1.99
184092--184298	103	2.0	101	85	5	272	29	21	24	24	1.99
184073--184298	124	1.8	124	91	0	371	29	21	24	24	1.99
184363--184399	19	1.9	19	88	0	56	21	13	29	35	1.92
184742--184772	2	15.5	2	100	0	62	51	0	0	48	1.00
184887--184976	2	46.0	2	95	4	166	50	0	0	50	1.00
186265--186290	3	8.7	3	100	0	52	34	0	0	65	0.93
191322--191361	17	2.4	16	87	4	53	52	2	2	42	1.28
191392--191444	5	11.4	5	82	15	69	43	0	0	56	0.99
191393--191444	23	2.3	23	90	6	79	44	0	0	55	0.99
191341--191444	28	3.8	28	74	10	101	44	0	1	53	1.11
191502--191560	22	2.6	22	83	5	73	57	1	0	40	1.09
191553--191585	14	2.4	14	90	5	50	54	0	0	45	0.99
191578--191649	28	2.6	28	78	17	78	48	0	1	50	1.09
191579--191644	26	2.5	26	83	13	75	48	0	1	50	1.10
191563--191647	29	2.8	29	78	8	91	49	0	1	49	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191602--191651	26	1.9	26	84	8	66	50	0	0	50	1.00
191711--191757	14	3.3	14	77	14	51	57	2	2	38	1.23
200980--201023	21	2.2	20	87	4	61	36	2	36	25	1.69
209375--209432	2	29.0	2	100	0	116	50	0	0	50	1.00
209442--209635	107	1.8	107	88	0	298	42	7	9	39	1.67
211009--211043	14	2.4	15	90	9	63	5	17	40	37	1.73
211096--211144	19	2.5	19	80	3	53	65	2	2	30	1.15
211380--211797	113	3.7	113	86	2	538	28	18	13	38	1.89
211372--211787	226	1.8	225	87	2	611	29	18	13	38	1.89
211815--211987	76	2.3	76	90	0	274	32	19	21	26	1.97

Tables:   1   2   3   4