genome.fa.s887.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000887.1 Hibiscus syriacus cultivar Beakdansim tig00001732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  662576

Tables:   1   2   3   4   

This is table  4  of  4  ( 432 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603564--603607	22	2.0	22	95	0	79	20	45	15	18	1.85
603871--603908	20	1.9	20	88	0	58	13	15	21	50	1.78
605228--605272	18	2.5	18	85	0	63	26	46	15	11	1.79
605742--605804	19	3.3	19	75	4	63	39	22	22	15	1.92
605777--605867	32	2.8	33	93	3	157	47	23	17	12	1.81
605777--605867	14	5.4	18	70	22	72	47	23	17	12	1.81
605884--605941	14	3.9	14	79	16	71	8	17	25	48	1.75
605879--605957	32	2.4	33	95	2	142	10	18	24	46	1.80
605898--606015	20	6.4	19	73	14	88	13	19	24	42	1.87
605942--605996	19	2.8	19	86	5	74	16	23	23	36	1.94
606031--606095	25	2.5	26	75	12	71	23	12	16	47	1.80
607988--608103	19	6.6	19	81	16	144	45	18	22	12	1.84
608041--608098	14	3.8	14	79	20	71	50	18	20	10	1.76
607988--608103	33	3.4	33	91	6	169	45	18	22	12	1.84
608122--608178	20	2.8	20	91	0	87	19	22	19	38	1.93
609228--609281	24	2.2	24	90	0	81	24	16	20	38	1.92
611689--611818	19	7.6	19	65	23	92	42	20	23	14	1.88
611689--611814	33	3.8	33	88	4	200	42	19	23	15	1.89
611687--611821	66	2.0	66	97	0	252	40	19	22	17	1.91
611814--611856	20	2.2	20	87	4	61	16	18	23	41	1.89
611842--611875	14	2.4	14	85	0	50	8	23	20	47	1.78
611997--612033	14	2.6	14	91	0	65	45	24	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613390--613456	21	3.2	21	68	4	55	19	20	35	23	1.95
613390--613512	42	2.9	41	79	7	113	22	17	36	23	1.94
615511--615571	20	3.1	19	79	9	68	44	18	24	13	1.85
615536--615623	33	2.6	33	89	1	131	39	25	23	11	1.88
615606--615657	20	2.7	19	82	5	68	48	23	17	11	1.79
615657--615693	19	1.9	19	88	0	56	10	16	21	51	1.74
616252--616344	20	4.6	20	77	2	78	25	16	24	33	1.96
616334--616426	20	4.5	21	78	4	100	17	24	18	39	1.91
616277--616407	41	3.2	41	83	4	140	20	19	20	38	1.93
616334--616426	41	2.3	41	100	0	186	17	24	18	39	1.91
617897--617933	19	1.9	19	94	0	65	32	29	16	21	1.95
617962--618022	20	3.0	20	74	9	70	31	22	19	26	1.98
618201--618243	22	2.0	22	90	0	68	23	37	16	23	1.94
618639--618691	20	2.7	20	90	0	79	16	18	26	37	1.93
618659--618714	20	2.8	20	91	0	85	10	16	23	50	1.76
618678--618721	20	2.2	20	91	0	70	11	13	20	54	1.69
620303--620358	21	2.7	21	83	5	60	21	17	33	26	1.96
620628--620696	20	3.5	20	91	0	111	34	26	21	17	1.95
620688--620762	33	2.2	34	83	2	89	46	17	18	17	1.84
620768--620806	19	2.0	20	85	5	53	15	10	17	56	1.66
620815--620859	20	2.2	20	92	0	72	15	24	26	33	1.95
621373--621466	42	2.2	42	88	3	136	23	38	18	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621369--621451	21	4.0	21	77	0	94	21	37	18	22	1.94
621397--621466	21	3.3	21	74	4	70	24	37	18	20	1.94
622674--622719	19	2.4	19	88	3	65	23	17	28	30	1.97
622685--622721	19	1.9	19	100	0	74	24	16	27	32	1.96
624898--624937	20	2.0	20	90	0	62	32	30	10	27	1.89
637204--637247	19	2.2	20	88	11	65	43	2	22	31	1.66
637446--637500	20	2.8	20	91	0	83	32	20	20	27	1.97
638034--638081	22	2.2	22	92	0	78	18	22	27	31	1.97
639567--639602	12	2.9	12	88	8	54	44	5	25	25	1.75
644151--644305	66	2.3	67	78	8	158	32	16	21	29	1.95
644291--644342	20	2.6	20	96	0	95	36	19	15	28	1.92
644670--644713	18	2.4	18	100	0	88	31	0	11	56	1.35
644894--644950	22	2.6	22	86	10	89	22	22	26	28	1.99
646158--646206	22	2.2	23	82	7	57	24	6	6	63	1.41
646715--646832	34	3.6	34	74	19	122	44	11	13	31	1.79
647358--647392	16	2.1	18	89	10	56	25	8	0	65	1.21
649505--649544	18	2.2	18	100	0	80	20	32	12	35	1.90
650052--650090	8	5.0	8	84	6	53	10	17	12	58	1.61
651240--651313	16	4.6	16	73	11	53	79	6	12	1	0.98
651240--651333	7	12.1	7	73	15	53	79	6	11	2	0.99
651965--652007	20	2.1	20	83	12	52	30	27	16	25	1.97
652922--653069	36	4.1	36	88	4	237	25	20	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653081--653196	36	3.2	36	84	6	146	25	21	15	37	1.92
652984--653160	98	1.8	97	86	3	257	28	18	14	38	1.90
653167--653327	67	2.5	66	81	4	191	32	22	8	36	1.85
653931--654356	102	4.2	101	83	8	458	34	24	18	22	1.96
654891--654957	33	2.0	33	94	0	116	43	11	14	29	1.82
655452--655510	17	3.3	17	74	19	57	27	8	1	62	1.33

Tables:   1   2   3   4

The End!