genome.fa.s8879.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008879.1 Hibiscus syriacus cultivar Beakdansim tig00112123_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  283077

Tables:   1   2   

This is table  2  of  2  ( 151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250972--251224	52	4.8	52	87	5	262	47	18	19	14	1.83
251038--251298	52	4.9	53	81	15	278	46	17	20	15	1.84
251305--251406	19	5.6	19	85	12	151	14	23	17	44	1.86
251513--251548	13	2.6	14	82	8	56	44	22	0	33	1.53
253507--253563	14	3.7	14	77	20	60	45	22	21	10	1.82
253488--253579	33	2.8	33	94	0	166	46	21	20	10	1.81
253451--253579	19	7.3	19	76	17	125	46	24	18	10	1.81
253580--253672	33	2.8	33	90	3	152	8	19	25	46	1.78
253575--253709	19	7.6	19	72	20	105	9	18	26	45	1.80
253753--254225	93	5.1	93	98	0	921	46	19	12	22	1.83
253753--254225	185	2.5	186	98	0	921	46	19	12	22	1.83
255931--256020	14	5.7	14	74	23	81	42	23	25	8	1.83
255923--256037	33	3.5	33	95	0	212	45	20	24	9	1.81
255930--256042	19	6.8	18	72	23	88	43	22	24	9	1.83
256054--256108	14	3.6	14	73	21	56	9	27	23	40	1.85
256229--256299	33	2.2	33	92	0	115	47	18	22	11	1.80
256480--256534	22	2.5	22	81	0	74	20	16	40	23	1.91
256680--256873	20	9.6	20	82	5	221	19	19	25	35	1.95
256680--256873	60	3.2	60	83	0	253	19	19	25	35	1.95
256866--256942	21	3.7	20	70	13	57	27	16	23	32	1.96
256928--256979	20	2.6	20	96	0	95	21	13	26	38	1.90
259187--259220	15	2.3	15	90	5	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270073--270136	21	3.1	21	75	4	76	17	18	26	37	1.93
270868--270955	22	4.1	22	75	11	94	37	23	19	19	1.94
270884--270974	41	2.2	42	86	9	125	40	23	18	17	1.91
270847--270983	63	2.2	63	83	7	163	40	21	18	18	1.92
271112--271162	16	3.0	16	82	8	57	49	1	1	47	1.24
271421--271466	21	2.2	21	84	3	58	17	2	36	43	1.61
271460--271493	13	2.5	14	90	4	52	23	0	29	47	1.52
276314--276755	219	2.0	219	99	0	866	29	12	25	32	1.92
277987--278013	11	2.5	11	100	0	54	18	0	37	44	1.50

Tables:   1   2

The End!