Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000888.1 Hibiscus syriacus cultivar Beakdansim tig00001735_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87289

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1946--2005
28
2.1
27
82
11
68
58
8
6
26
1.52
3194--4066
33
26.2
33
87
2
1149
21
20
18
38
1.93
3194--4066
67
13.1
67
87
2
1197
21
20
18
38
1.93
3194--4066
100
8.7
99
86
2
1149
21
20
18
38
1.93
3227--4063
267
3.1
268
88
1
1227
21
21
18
38
1.93
6236--6320
14
5.7
14
77
14
82
0
17
1
81
0.76
6236--6321
45
1.9
45
86
9
122
0
17
1
81
0.76
6619--6645
2
13.5
2
100
0
54
51
0
0
48
1.00
13269--13303
18
1.9
18
88
11
54
71
2
2
22
1.13
13241--13339
16
6.1
16
70
17
53
64
4
4
27
1.29
13435--13495
28
2.2
28
80
11
72
62
8
8
21
1.49
14592--14622
15
2.0
16
93
6
55
22
12
6
58
1.58
16310--16361
19
2.7
18
80
11
52
26
9
0
63
1.25
17280--17971
370
1.9
370
90
0
1116
31
14
21
33
1.93
21280--21312
16
2.1
16
88
11
50
57
6
9
27
1.53
21391--21415
10
2.5
10
100
0
50
68
8
0
24
1.16
21811--21884
21
3.4
21
68
14
60
27
20
22
29
1.98
21768--21884
44
2.7
44
88
4
175
29
20
22
28
1.98
33720--33776
21
2.7
21
91
0
87
31
31
15
21
1.94
33766--33807
21
2.0
21
95
0
75
23
26
23
26
2.00
34406--34480
24
3.2
24
76
14
84
30
22
25
21
1.99
34413--34494
23
3.5
23
79
12
96
29
26
26
17
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34736--34798
30
2.1
30
90
0
99
36
20
4
38
1.74
36019--36411
138
2.8
138
85
1
518
29
13
13
43
1.82
43897--43979
21
4.0
21
91
0
130
31
31
16
20
1.95
43969--44010
21
2.0
21
95
0
75
23
26
23
26
2.00
44609--44683
24
3.2
24
76
14
84
30
22
25
21
1.99
44616--44697
23
3.5
23
79
12
96
29
26
26
17
1.97
44939--45001
30
2.1
30
90
0
99
36
20
4
38
1.74
46217--46607
137
2.8
136
84
2
487
29
13
13
43
1.82
54093--54175
21
4.0
21
91
0
130
31
31
16
20
1.95
54165--54206
21
2.0
21
95
0
75
23
26
23
26
2.00
54805--54879
24
3.2
24
76
14
84
30
22
25
21
1.99
54812--54893
23
3.5
23
79
12
96
29
26
26
17
1.97
55135--55197
30
2.1
30
93
0
108
34
22
4
38
1.75
56418--56810
138
2.8
138
85
1
509
29
13
13
43
1.82
58606--58662
22
2.6
22
88
5
80
45
8
26
19
1.79
59104--61862
4
693.5
4
96
2
5088
25
0
24
49
1.51
62183--62821
287
2.2
286
81
9
721
31
14
6
46
1.71
63357--63409
26
2.1
26
92
3
90
33
7
26
32
1.84
65061--65091
13
2.4
13
100
0
62
58
25
6
9
1.54
65292--65339
2
25.0
2
80
16
57
47
0
4
47
1.21
65293--65340
14
3.0
16
80
19
64
47
0
6
45
1.27
71586--71685
36
2.8
36
93
0
164
30
9
30
31
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76039--76116
21
3.7
21
87
0
120
33
28
20
17
1.96
77740--77769
15
2.1
14
93
6
51
0
33
0
66
0.92
80077--80139
2
31.5
2
100
0
126
49
0
0
50
1.00
81292--81451
63
2.5
63
82
6
189
25
25
17
32
1.97
83259--83299
17
2.4
18
80
12
50
31
26
0
41
1.56
84824--84892
23
3.0
23
80
0
93
30
27
24
17
1.97
85281--85311
2
16.0
2
93
6
55
48
0
0
51
1.00
85354--85385
2
16.0
2
100
0
64
50
0
0
50
1.00
86482--86643
65
2.5
62
80
10
175
24
24
19
31
1.98

Tables:   1

The End!