genome.fa.s8881.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008881.1 Hibiscus syriacus cultivar Beakdansim tig00112127_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  608427

Tables:   1   2   3   

This is table  1  of  3  ( 252 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366--516	24	6.4	24	82	4	128	39	21	12	27	1.89
383--519	47	2.9	48	87	6	190	38	20	14	26	1.91
383--519	24	5.8	24	83	5	163	38	20	14	26	1.91
4675--4723	2	25.0	2	95	4	91	51	0	0	48	1.00
6258--6299	14	3.0	14	89	0	66	47	28	0	23	1.52
6264--6305	14	3.0	14	80	19	52	50	26	0	23	1.50
6868--6944	31	2.5	31	95	2	136	40	3	3	51	1.38
7518--7567	23	2.2	23	82	7	57	50	4	4	42	1.40
7578--7669	39	2.4	36	78	20	89	39	2	2	56	1.24
16143--16188	21	2.2	20	84	3	56	52	4	4	39	1.41
16887--16926	6	6.7	6	100	0	80	67	0	17	15	1.23
22879--23071	30	6.4	30	96	0	359	33	23	18	23	1.97
23057--23149	31	3.0	31	79	3	98	34	21	17	26	1.95
27317--27599	30	9.4	30	100	0	566	32	23	20	23	1.98
27972--28018	2	24.0	2	95	4	87	51	0	0	48	1.00
32718--32763	23	2.0	22	83	4	56	50	4	19	26	1.66
39360--39409	25	2.0	25	100	0	100	8	8	36	48	1.62
52507--52546	21	1.9	21	84	0	53	37	5	17	40	1.72
54218--54270	21	2.5	21	81	0	70	20	22	18	37	1.94
54260--54573	20	15.6	20	93	0	529	40	20	19	20	1.92
54770--54835	22	3.0	22	82	4	80	24	36	15	24	1.93
55171--55261	20	4.6	20	84	1	85	15	16	23	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57137--57298	20	8.5	20	82	10	180	40	20	19	18	1.91
57140--57330	40	5.2	38	75	17	136	41	19	20	17	1.90
57345--57471	20	6.3	20	94	1	202	22	18	21	37	1.94
57957--57998	21	2.2	19	87	12	59	21	35	19	23	1.96
59443--59478	14	2.6	14	90	0	54	30	0	22	47	1.52
59584--59673	33	2.7	33	89	3	126	42	20	23	14	1.88
59728--59816	20	4.4	20	88	2	126	16	20	25	37	1.93
62237--62291	25	2.2	24	84	6	74	41	20	20	18	1.90
63132--63179	20	2.4	20	89	0	69	25	18	25	31	1.98
63166--63257	20	4.6	20	84	2	130	18	21	20	39	1.93
63249--63301	21	2.5	21	84	0	70	37	18	22	20	1.94
64051--64105	22	2.6	22	85	5	69	60	1	1	36	1.18
73194--73226	6	5.5	6	100	0	66	15	0	51	33	1.43
88756--88831	29	2.5	30	81	12	93	57	0	1	40	1.07
90522--90569	23	2.1	23	84	0	60	35	10	18	35	1.85
90996--91058	23	2.7	23	92	0	99	38	20	4	36	1.74
91477--91562	39	2.2	39	93	0	145	18	13	18	48	1.80
91819--91855	18	2.1	18	89	0	56	51	10	5	32	1.60
92287--92349	23	2.7	23	92	0	99	38	20	4	36	1.74
92683--92748	25	2.6	25	75	0	78	42	12	9	36	1.74
95212--95884	183	3.7	183	94	1	1127	34	16	14	34	1.89
97339--97407	3	23.0	3	74	0	57	23	34	7	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97339--97422	12	7.0	12	80	0	69	21	34	8	35	1.84
97339--97422	18	4.7	18	75	0	78	21	34	8	35	1.84
97355--97419	30	2.2	30	88	0	94	20	35	10	33	1.87
97343--97422	6	13.3	6	78	0	52	20	35	8	36	1.83
99005--100013	199	5.1	199	96	1	1839	31	16	15	36	1.90
99005--100014	394	2.5	395	95	1	1844	31	16	15	36	1.90
100122--100170	19	2.6	19	93	0	80	57	10	2	30	1.43
102060--102124	21	3.1	21	79	0	76	16	30	13	38	1.88
104503--104549	20	2.3	20	89	10	78	17	17	10	55	1.69
104337--104761	181	2.4	180	88	2	629	25	16	14	43	1.86
118893--118954	24	2.8	21	76	19	63	20	22	32	24	1.98
123363--123664	153	2.0	148	90	8	475	31	21	18	29	1.97
125887--125920	17	2.0	17	88	0	50	14	26	8	50	1.72
126020--126079	18	3.4	18	81	11	70	50	0	3	46	1.18
135498--135524	14	1.9	14	100	0	54	44	3	7	44	1.49
135670--135705	14	2.6	14	90	0	54	41	0	2	55	1.14
135794--135836	10	3.9	10	78	21	50	44	0	0	55	0.99
135793--135849	24	2.4	24	85	5	71	45	0	0	54	0.99
135986--136045	22	2.7	23	70	19	63	55	3	0	41	1.16
135986--136053	23	3.0	23	72	10	68	52	2	0	44	1.16
137789--137827	12	3.2	12	85	7	53	69	2	28	0	1.02
137796--137828	15	2.1	16	88	5	50	72	0	27	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153850--153927	39	2.0	39	82	9	97	37	11	17	33	1.86
153942--153973	14	2.3	14	94	0	55	9	15	25	50	1.74
153943--153993	24	2.1	24	85	0	66	13	11	19	54	1.69
155061--155147	10	10.3	10	64	34	53	11	11	19	57	1.64
155066--155163	16	6.1	16	92	0	151	13	11	18	57	1.65
155092--155163	6	13.3	6	68	21	52	13	12	18	55	1.69
155232--155264	16	2.1	16	94	0	57	6	9	24	60	1.49
155498--155569	22	3.6	19	78	12	81	22	36	18	23	1.95
156361--156398	20	2.0	20	89	5	60	60	2	10	26	1.43
170072--170124	20	2.5	21	77	20	56	43	0	1	54	1.11
170116--170195	19	4.3	19	68	23	53	43	0	2	53	1.14
170113--170189	27	2.8	27	80	9	102	42	0	2	54	1.14
170107--170197	27	3.3	28	77	11	91	43	0	2	53	1.12
172349--172420	31	2.3	31	87	0	99	34	11	15	38	1.83
172554--172677	62	2.0	62	98	0	239	45	22	15	16	1.85
186127--186176	21	2.4	21	100	0	100	28	10	24	38	1.87
193186--193298	21	5.3	20	66	21	61	22	16	24	36	1.94
193186--193323	42	3.3	42	92	2	231	21	17	23	36	1.94
193205--193317	21	5.3	21	70	14	97	22	18	22	37	1.94
194046--194225	23	8.6	20	76	12	98	36	22	19	21	1.95
194061--194171	42	2.6	42	85	2	141	37	22	18	21	1.94
194134--194180	19	2.3	21	82	14	71	36	27	17	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194103--194234	63	2.1	62	87	2	185	36	20	19	23	1.95
194155--194235	44	1.9	41	87	9	119	34	19	22	23	1.96
194043--194235	105	1.8	105	92	0	323	35	21	19	23	1.96
201411--201478	26	2.6	25	82	15	77	35	2	1	60	1.21
201412--201462	12	4.3	11	79	16	57	35	1	0	62	1.06
201421--201474	25	2.2	25	83	12	67	31	3	1	62	1.23
204188--204232	21	2.1	21	87	0	63	31	28	24	15	1.96
204816--204850	18	1.9	18	88	11	54	54	5	17	22	1.64
205649--205952	149	2.0	149	99	0	599	27	17	20	34	1.95
205931--205975	23	2.0	23	86	0	63	20	24	28	26	1.99
210841--210886	2	23.0	2	95	0	83	47	0	0	52	1.00
215617--215652	18	2.1	18	89	5	56	41	5	2	50	1.40
219055--219110	21	2.7	21	75	10	69	39	5	17	37	1.73
219282--219310	2	14.5	2	100	0	58	51	0	0	48	1.00
219751--219868	50	2.4	51	78	4	123	17	31	28	22	1.97
220031--220071	18	2.3	18	91	4	66	29	4	2	63	1.28
225781--225905	50	2.5	51	80	7	139	22	26	33	17	1.96
239947--240029	32	2.6	32	83	5	98	16	14	30	38	1.89
241333--241396	32	2.0	33	84	9	87	12	10	34	42	1.78
256189--256221	16	2.1	16	100	0	66	57	6	6	30	1.47
259181--259266	24	3.4	25	86	10	113	31	17	16	34	1.92
263241--263323	31	2.7	31	78	14	91	50	8	3	37	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268290--268982	105	6.6	105	94	0	1145	22	22	19	35	1.96
269887--269972	8	11.9	7	78	14	63	6	13	0	79	0.93
269902--269992	17	5.5	16	81	13	96	9	15	0	74	1.06
269902--269992	8	11.0	8	81	15	96	9	15	0	74	1.06
290748--290835	46	1.9	46	100	0	176	31	10	18	39	1.84
297885--297936	20	2.6	20	78	0	59	25	21	21	32	1.98
302128--302177	5	10.0	5	80	8	57	58	4	0	38	1.17
304722--304770	23	2.2	24	82	10	59	36	10	8	44	1.68
306330--306361	12	2.7	12	90	0	55	65	0	15	18	1.27
323014--323086	30	2.4	30	86	0	101	30	21	20	27	1.98

Tables:   1   2   3