genome.fa.s8884.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008884.1 Hibiscus syriacus cultivar Beakdansim tig00112130_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  397847

Tables:   1   2   

This is table  1  of  2  ( 196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530--554	12	2.1	12	100	0	50	0	28	0	72	0.86
725--769	23	2.0	23	86	8	65	35	22	15	26	1.94
1457--1685	20	11.4	20	88	1	253	19	17	25	37	1.94
6211--6297	35	2.5	34	77	18	90	55	9	8	27	1.60
6780--6841	27	2.3	27	97	0	115	9	17	50	22	1.75
8599--8639	18	2.3	18	91	4	66	63	2	4	29	1.28
10380--10426	20	2.3	21	79	17	55	14	10	2	72	1.21
13128--13157	2	15.0	2	100	0	60	50	0	0	50	1.00
19280--19334	23	2.4	23	90	0	83	36	5	20	38	1.75
20173--20240	23	3.0	23	88	0	100	19	29	27	23	1.98
20271--20303	17	2.0	17	88	5	50	33	30	6	30	1.82
24608--24662	23	2.4	23	90	0	83	36	5	20	38	1.75
25544--25611	23	3.0	23	86	0	91	19	27	27	25	1.98
25642--25674	17	2.0	17	88	5	50	33	30	6	30	1.82
29995--30049	23	2.4	23	93	0	92	36	7	20	36	1.80
30692--30899	105	2.0	105	86	0	290	25	15	20	37	1.93
30697--30929	105	2.2	104	81	3	254	26	15	21	37	1.92
30930--30997	23	3.0	23	88	0	100	19	29	27	23	1.98
41715--41776	31	2.0	31	100	0	124	48	12	12	25	1.77
46940--47160	4	55.2	4	90	0	334	47	23	2	26	1.65
49035--49080	3	14.7	3	91	8	74	32	4	0	63	1.14
49076--49107	11	2.8	11	95	4	55	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61881--61918	19	2.0	20	94	5	69	84	0	13	2	0.73
61883--61936	23	2.3	24	90	6	85	85	0	9	5	0.75
63084--63276	105	1.8	105	98	0	377	30	12	22	34	1.91
63188--63359	83	2.1	83	96	2	319	27	13	22	36	1.92
63067--63547	188	2.6	188	97	1	919	29	12	23	34	1.91
63271--63464	105	1.8	105	96	2	363	29	12	22	35	1.91
63376--63630	83	3.1	83	97	1	476	27	12	22	36	1.91
63188--63691	271	1.9	271	99	0	990	28	12	22	35	1.91
64425--64865	225	2.0	225	97	0	828	37	15	19	27	1.92
64425--64865	112	3.9	113	95	2	782	37	15	19	27	1.92
65187--65250	3	20.7	3	90	6	101	32	4	0	62	1.16
65246--65277	11	2.8	11	95	4	55	56	0	0	43	0.99
70140--70176	18	2.1	18	89	0	56	27	18	0	54	1.44
91818--91906	27	3.3	27	98	0	169	26	25	21	25	1.99
95542--95625	8	10.5	8	98	0	123	44	0	5	50	1.26
99308--99339	2	16.0	2	100	0	64	50	0	0	50	1.00
101491--101517	2	13.5	2	100	0	54	51	0	0	48	1.00
102700--102812	60	1.9	60	83	5	149	36	12	14	37	1.83
107988--108017	15	2.0	15	100	0	60	20	13	13	53	1.72
113740--113815	29	2.5	30	79	12	75	30	0	3	65	1.10
119005--119039	15	2.3	15	100	0	70	28	34	22	14	1.93
119560--119598	20	2.0	20	94	0	69	28	33	28	10	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126339--126378	21	2.0	21	95	5	73	27	32	30	10	1.89
136499--136584	44	2.0	44	83	0	109	30	13	15	40	1.86
139967--139993	2	13.5	2	100	0	54	48	0	0	51	1.00
144564--144590	14	1.9	14	100	0	54	51	29	0	18	1.46
144656--144701	7	6.6	7	89	0	65	47	32	0	19	1.50
144663--144706	14	3.2	14	77	3	54	50	27	0	22	1.50
144655--144695	21	2.0	21	95	0	73	48	31	0	19	1.49
146625--146662	11	3.5	11	88	0	58	28	7	28	34	1.85
146862--146914	16	3.4	16	87	10	74	69	1	1	26	1.09
146871--146916	8	5.9	8	79	5	58	69	0	2	28	1.00
149750--149813	31	2.0	32	85	8	87	37	3	4	54	1.37
150267--150308	20	2.1	20	86	8	59	38	2	2	57	1.25
155005--155531	127	4.2	127	95	0	941	21	24	22	32	1.98
155005--155531	253	2.1	253	95	0	948	21	24	22	32	1.98
155955--156055	34	3.0	33	82	5	130	38	3	3	53	1.38
156576--156626	21	2.5	21	93	3	86	21	27	33	17	1.96
158434--158519	32	2.6	34	77	9	95	58	1	0	40	1.06
158406--158507	32	3.3	32	77	9	88	59	0	0	40	0.97
162247--162275	2	14.5	2	100	0	58	51	0	0	48	1.00
164128--164357	106	2.2	106	95	0	424	36	10	22	31	1.87
164969--165015	24	2.0	24	87	4	69	19	21	25	34	1.96
166519--166592	21	3.6	21	77	3	96	20	18	27	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166540--166651	20	5.5	20	75	8	118	14	23	25	37	1.92
166601--166675	21	3.6	21	71	12	73	13	22	28	36	1.92
166516--166656	41	3.4	41	95	1	239	17	20	25	36	1.94
166516--166681	41	4.0	40	94	2	201	16	21	24	37	1.94
166774--166844	6	12.5	6	98	1	114	29	53	16	0	1.44
167337--167443	6	18.5	6	99	0	186	0	16	52	30	1.44
167537--167671	41	3.3	41	86	7	193	39	22	22	15	1.92
167654--167688	17	2.1	17	100	0	70	40	20	28	11	1.87
167575--167757	99	1.9	96	89	5	287	38	23	20	16	1.93
167671--167923	41	6.2	41	74	12	243	35	24	20	19	1.96
167684--167780	23	4.7	23	71	21	97	35	26	16	21	1.95
167814--167919	20	5.2	20	64	12	54	36	26	18	17	1.94
167624--167858	58	3.9	59	74	13	196	35	23	21	19	1.96
167562--167927	21	18.1	21	66	13	142	36	24	20	18	1.94
169403--169427	2	12.5	2	100	0	50	52	0	48	0	1.00
172918--173002	43	1.9	45	90	7	138	30	10	17	41	1.83
182559--182613	17	2.8	20	72	25	55	54	0	0	45	0.99
186632--186682	24	2.1	24	96	0	93	35	17	21	25	1.95
189195--189228	17	2.1	16	88	5	50	76	0	8	14	1.01
189702--189748	24	2.0	24	83	8	60	57	12	2	27	1.47
193046--193094	19	2.5	19	80	3	53	65	0	14	20	1.27
199435--199468	17	2.1	16	88	5	50	76	0	8	14	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199943--199989	24	2.0	24	83	8	60	57	12	2	27	1.47
202725--203133	107	3.8	107	84	4	513	25	15	24	34	1.95
208127--208155	13	2.3	13	94	5	51	37	0	13	48	1.43
208153--208232	31	2.6	31	91	0	124	31	35	2	31	1.71
222793--222902	58	1.9	58	90	0	175	33	15	20	30	1.93
237333--237439	35	3.0	36	91	5	182	32	14	16	36	1.89
246941--246989	22	2.2	22	92	0	89	24	32	22	20	1.98
251829--251863	18	1.9	18	88	0	52	28	31	20	20	1.97
251848--251926	22	3.5	22	86	3	113	29	32	24	13	1.94
252475--252637	64	2.5	63	83	7	177	25	20	18	35	1.95
253938--254041	35	2.9	37	88	7	160	34	12	16	36	1.86
257202--257255	8	6.9	8	75	12	58	57	1	0	40	1.09
257176--257265	21	4.3	22	72	22	61	51	1	0	47	1.08
257341--257409	19	3.6	18	71	21	52	49	1	1	47	1.19
257304--257389	27	3.1	27	71	18	70	47	1	2	48	1.22
257376--257448	23	3.1	23	82	5	76	52	2	0	45	1.15
259224--259265	18	2.3	19	80	12	52	59	0	2	38	1.10
261681--261796	60	1.9	60	83	0	151	32	11	5	50	1.60
263593--263697	30	3.5	30	86	1	113	38	3	0	57	1.24
265085--265128	16	2.8	16	85	0	52	36	15	13	34	1.87
265987--266071	2	44.5	2	76	13	72	47	4	1	47	1.31
266013--266060	25	1.9	25	86	0	69	47	6	2	43	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266296--266374	13	5.8	13	71	14	54	39	10	3	46	1.56
266274--266406	53	2.5	51	74	12	135	42	9	6	42	1.63
266197--266443	136	1.8	136	86	5	365	42	7	6	43	1.59
266435--266485	26	2.0	26	96	0	93	33	15	9	41	1.80
266507--266577	21	3.2	21	70	24	56	42	5	11	40	1.64
267623--267650	14	2.0	14	100	0	56	50	7	7	35	1.57
269345--269386	15	3.1	14	83	16	61	47	14	16	21	1.82
269339--269385	12	3.5	13	83	13	60	46	17	19	17	1.84
271675--271714	21	1.9	21	94	0	71	30	15	7	47	1.72
271703--271808	32	3.3	32	90	3	160	33	7	14	45	1.73

Tables:   1   2