genome.fa.s8884.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008884.1 Hibiscus syriacus cultivar Beakdansim tig00112130_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  397847

Tables:   1   2   

This is table  2  of  2  ( 196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271792--271846	13	4.2	13	75	13	58	34	3	12	49	1.59
272243--272298	15	3.6	15	79	9	67	32	12	12	42	1.80
272262--272295	18	1.9	18	94	5	61	38	11	11	38	1.79
272389--272420	16	2.0	17	88	11	50	46	21	18	12	1.82
277120--277166	21	2.2	21	80	0	58	21	27	14	36	1.93
277162--277234	20	3.7	20	98	0	137	39	20	19	20	1.92
277787--277881	20	4.8	20	81	11	108	50	17	20	11	1.77
277787--277881	40	2.4	40	82	10	124	50	17	20	11	1.77
277926--278028	14	6.6	14	74	20	89	9	24	21	44	1.82
277909--278015	33	3.2	33	95	0	187	11	21	20	46	1.81
277959--278049	47	1.9	48	90	2	148	10	25	21	41	1.86
277933--278076	20	7.2	20	65	26	81	11	24	18	45	1.82
279753--280128	94	4.1	93	90	2	535	22	11	17	48	1.78
280239--280276	20	1.9	20	94	0	67	50	26	15	7	1.72
280306--280360	14	3.6	14	73	21	56	9	23	21	45	1.80
280285--280417	33	3.8	33	84	11	185	9	22	21	46	1.80
280282--280417	19	7.6	19	75	17	139	9	22	21	46	1.80
280285--280442	33	4.3	38	85	7	124	12	21	19	46	1.82
280902--280960	21	2.8	21	73	0	64	25	33	20	20	1.97
282254--282290	14	2.6	14	86	0	56	32	0	18	48	1.49
282444--282552	19	6.2	19	70	21	85	13	24	19	42	1.88
282439--282532	33	2.8	33	96	0	170	12	24	18	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282505--282598	20	4.7	20	72	13	68	21	20	23	35	1.96
286671--286886	108	2.0	108	99	0	423	39	10	10	39	1.74
289259--289310	23	2.3	24	74	12	65	15	21	42	21	1.89
292840--293055	108	2.0	108	100	0	432	39	11	10	38	1.75
293349--293388	21	1.9	21	89	0	62	42	17	22	17	1.89
295313--295392	40	2.0	40	97	0	151	27	8	25	38	1.85
295594--295647	2	27.0	2	100	0	108	50	0	0	50	1.00
298397--298461	8	7.8	8	72	13	51	29	3	0	67	1.05
298884--298980	36	2.7	36	79	13	103	31	4	1	62	1.20
302527--303182	110	6.0	110	91	1	1034	34	23	18	23	1.96
303289--303891	84	7.3	83	81	5	637	30	25	19	24	1.98
304239--304304	3	22.7	3	83	14	77	31	0	0	68	0.90
304239--304306	8	7.9	8	81	15	66	30	0	0	69	0.89
304358--304424	33	2.0	33	94	5	118	38	19	11	29	1.88
306888--306935	22	2.1	23	85	11	64	45	6	2	45	1.40
308792--309142	179	2.0	179	97	0	666	37	17	13	30	1.89
313372--313426	28	2.0	28	92	0	92	34	12	18	34	1.89
314031--314213	60	3.0	60	80	3	224	38	3	24	34	1.72
314788--314831	15	2.9	15	86	6	63	11	59	18	11	1.61
317026--317057	12	2.7	12	95	0	55	43	12	31	12	1.80
318063--318106	16	2.8	16	89	0	61	47	6	25	20	1.74
319416--319446	2	15.5	2	100	0	62	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321011--321041	16	1.9	16	100	0	62	38	6	16	38	1.74
330778--330860	40	2.1	39	82	10	98	22	13	6	57	1.57
331565--331618	2	26.5	2	92	3	90	51	0	1	46	1.11
336091--336123	15	2.2	15	94	0	57	42	0	3	54	1.15
341025--341157	18	7.4	18	87	1	187	28	30	22	18	1.97
341025--341159	53	2.5	53	92	1	225	28	30	22	18	1.97
341493--341552	24	2.5	24	88	0	93	28	20	15	36	1.92
344527--344570	2	22.0	2	95	0	79	50	2	0	47	1.13
344816--344939	18	6.9	18	86	0	176	25	31	22	20	1.98
344816--344939	54	2.3	54	94	0	212	25	31	22	20	1.98
345674--345730	20	2.6	22	91	8	91	26	22	21	29	1.99
345719--345857	63	2.2	63	82	7	158	27	23	17	31	1.97
352342--352366	2	12.5	2	100	0	50	48	0	0	52	1.00
353436--353508	38	1.9	38	88	5	112	50	5	2	41	1.40
357246--357272	4	6.8	4	100	0	54	22	0	0	77	0.76
357692--357764	30	2.4	30	95	0	128	42	10	13	32	1.79
357767--357826	31	2.0	31	83	9	79	53	3	3	40	1.34
365092--365235	21	7.0	21	69	13	93	21	20	22	35	1.96
365098--365235	42	3.3	42	89	2	217	21	19	23	35	1.96
366057--366123	19	3.3	19	71	15	62	32	17	20	28	1.96
366065--366130	19	3.3	19	69	12	51	36	19	19	24	1.95
366129--366174	21	2.2	21	92	0	74	19	19	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366892--366945	27	2.0	27	89	3	83	16	16	12	53	1.73
370430--370472	17	2.5	17	92	0	77	13	23	46	16	1.83
371149--371889	55	13.6	55	89	2	1055	28	27	14	28	1.95
372889--372943	8	7.4	8	75	22	57	12	9	0	78	0.97
372889--372971	42	2.0	42	85	7	114	10	13	0	75	1.04
376449--376476	8	3.5	8	100	0	56	50	10	0	39	1.37
385975--386017	17	2.5	17	92	0	77	13	23	46	16	1.83
386607--386656	22	2.3	23	80	13	61	46	8	12	34	1.70
387016--387053	13	3.0	13	84	7	51	63	0	0	36	0.95
393372--393407	18	1.9	18	88	5	54	50	0	0	50	1.00

Tables:   1   2

The End!