genome.fa.s8887.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008887.1 Hibiscus syriacus cultivar Beakdansim tig00112152_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  452931

Tables:   1   2   

This is table  2  of  2  ( 157 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368822--368866	20	2.2	20	84	0	63	40	26	22	11	1.87
370881--370916	15	2.4	15	95	0	63	16	47	5	30	1.70
371299--371332	2	17.0	2	100	0	68	50	0	0	50	1.00
371448--372065	54	11.3	54	80	4	423	33	20	16	29	1.95
371456--372065	108	5.6	108	81	4	684	33	20	17	29	1.95
371459--372065	162	3.7	162	82	4	741	33	20	16	29	1.95
371804--371925	63	1.9	63	88	6	185	36	18	17	27	1.94
371811--371945	63	2.1	64	82	8	161	34	18	17	28	1.94
371751--371979	117	2.0	117	87	0	332	32	20	18	28	1.96
372385--372443	22	2.8	21	80	7	66	28	28	13	28	1.94
378515--378931	54	7.8	54	81	4	443	33	20	16	29	1.95
378516--378934	162	2.6	161	85	1	538	33	20	16	29	1.94
379356--379426	19	3.5	21	79	12	85	25	25	15	33	1.95
383737--383787	22	2.3	22	93	0	84	29	27	25	17	1.98
393912--393969	23	2.7	21	84	7	64	24	29	27	18	1.98
393955--393994	21	1.9	21	89	0	62	25	40	25	10	1.86
396684--396899	109	2.0	107	98	1	414	41	17	14	26	1.88
397484--397544	25	2.4	25	88	0	86	40	22	18	18	1.91
398248--398666	68	6.2	68	85	2	538	32	13	23	30	1.93
398248--398666	204	2.1	203	87	0	613	32	13	23	30	1.93
398624--398960	81	4.2	81	85	1	424	35	10	22	30	1.89
398624--399019	81	4.9	81	83	2	415	36	11	22	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400177--400244	34	1.9	34	91	5	109	50	0	0	50	1.00
400154--400233	2	44.5	2	70	20	61	50	0	0	50	1.00
403336--403385	19	2.6	19	87	0	64	34	18	18	30	1.94
403686--403886	55	3.8	54	77	9	214	36	13	17	31	1.89
404018--404402	204	1.9	204	88	1	583	32	15	23	29	1.95
404016--404389	68	5.5	68	88	1	525	31	15	23	29	1.95
404362--404673	80	3.9	80	83	7	355	33	11	25	29	1.91
404361--404650	161	1.8	160	84	2	377	33	11	25	29	1.91
419139--419231	43	2.2	43	83	9	111	48	4	22	24	1.69
423516--423574	30	1.9	31	93	3	102	32	6	22	38	1.80
424677--424730	28	1.9	28	88	0	81	42	9	31	16	1.80
424864--424911	22	2.2	22	84	0	60	29	20	25	25	1.99
425185--425223	18	2.2	17	86	4	51	56	0	15	28	1.40
436143--436184	23	1.9	23	85	9	61	21	2	19	57	1.52
448148--448230	29	2.8	29	92	1	139	43	9	14	32	1.78

Tables:   1   2

The End!