genome.fa.s8889.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008889.1 Hibiscus syriacus cultivar Beakdansim tig00112154_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105664

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2850--2895	23	2.0	23	91	0	74	39	8	19	32	1.82
5767--5795	14	2.0	15	93	6	51	34	20	13	31	1.92
5614--7258	198	8.3	198	86	3	2222	27	14	15	42	1.86
5614--7258	395	4.2	394	91	2	2530	27	14	15	42	1.86
5614--7261	792	2.1	793	90	2	2623	27	14	15	42	1.86
10236--11728	199	7.5	199	92	1	2424	27	15	15	41	1.87
12074--12122	19	2.6	19	90	3	73	57	10	2	30	1.43
13579--13617	18	2.2	18	95	0	69	5	41	0	53	1.23
14026--14059	9	3.8	9	88	0	50	2	52	8	35	1.47
14297--14353	24	2.5	21	76	17	60	49	8	1	40	1.44
15603--15651	19	2.6	20	87	12	77	38	18	0	42	1.50
16036--16533	181	2.7	181	91	0	789	27	16	12	43	1.83
16372--16693	163	2.0	164	87	1	468	27	13	13	46	1.80
16535--17394	182	4.8	183	85	3	1057	26	14	13	45	1.82
17323--17361	20	1.9	21	94	5	71	12	15	25	46	1.81
18142--18189	20	2.3	22	85	7	64	58	6	10	25	1.54
21356--21452	45	2.1	47	82	3	117	44	18	12	24	1.84
21385--21452	23	2.9	23	72	8	66	44	16	13	26	1.84
22625--22670	21	2.0	23	84	12	60	67	6	8	17	1.39
26653--26694	19	2.2	19	95	0	75	23	30	19	26	1.98
26653--26702	19	2.6	18	87	12	73	24	32	18	26	1.97
26725--26778	21	2.5	22	82	11	67	27	25	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32053--32122	36	2.0	36	85	2	97	30	18	7	44	1.76
32374--32422	24	2.0	24	84	0	62	18	14	6	61	1.53
35833--35872	21	1.9	21	89	0	62	10	25	40	25	1.86
35853--35915	20	2.9	21	79	9	65	15	25	34	23	1.95
39568--39611	21	2.1	21	83	8	54	25	13	6	54	1.63
39723--39762	21	1.9	21	85	10	55	35	10	2	52	1.48
43352--43407	14	3.9	14	72	11	51	17	0	5	76	0.96
43348--43414	34	1.9	35	82	14	86	17	0	5	76	0.99
44416--44454	16	2.4	16	91	0	60	25	7	41	25	1.82
45688--45737	21	2.3	22	79	3	57	46	6	34	14	1.69
47285--47482	99	2.0	99	89	0	306	34	18	17	29	1.94
47886--47938	26	2.0	26	96	0	97	43	18	15	22	1.87
48683--49555	84	10.5	84	80	4	845	33	23	18	24	1.97
50959--50998	19	2.2	18	86	4	53	15	7	0	77	0.98
51167--51230	21	3.1	21	75	4	76	17	18	26	37	1.93
52365--52498	22	6.4	22	82	5	127	38	24	17	19	1.92
52431--52478	19	2.5	19	100	0	96	41	18	20	18	1.90
52696--52814	8	14.8	8	69	20	52	22	2	1	73	1.05
52725--52811	7	11.9	7	69	13	50	24	0	1	74	0.88
52727--52811	12	6.9	12	67	18	50	24	0	1	74	0.89
52728--52814	11	7.8	11	75	7	77	25	0	1	73	0.90
52728--52814	34	2.6	32	81	15	97	25	0	1	73	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54169--54209	2	20.5	2	100	0	82	48	0	0	51	1.00
54303--54360	2	29.5	2	96	3	109	50	0	0	50	1.00
60652--60717	30	2.2	30	94	0	114	57	7	1	33	1.36
61853--61925	19	3.6	20	75	15	69	54	2	1	41	1.23
62275--62345	34	2.1	34	91	0	115	50	15	11	22	1.75
65982--66064	2	41.5	2	100	0	166	50	0	0	49	1.00
69830--69953	23	5.3	23	78	6	108	35	26	21	16	1.94
69868--69961	46	2.0	46	87	4	136	31	26	25	15	1.96
70046--70092	16	3.0	16	78	15	53	44	19	8	27	1.79
70065--70187	45	2.7	45	83	5	140	37	19	9	33	1.85
77059--77156	29	3.3	29	69	16	83	31	21	5	41	1.75
77030--77190	60	2.7	60	88	1	216	32	20	4	42	1.74
77033--77188	31	5.2	31	64	18	78	33	19	5	41	1.74
77366--77512	60	2.5	60	82	6	172	39	5	20	34	1.76
91006--91368	131	2.8	131	79	2	318	41	17	9	30	1.82
92354--92428	35	2.1	35	90	0	114	34	0	21	44	1.53
92603--92741	73	1.9	72	92	4	235	36	20	12	30	1.89
93756--93833	35	2.2	35	81	2	93	39	1	19	39	1.60
95323--95360	20	1.9	20	100	0	76	15	21	31	31	1.94
95454--95562	48	2.3	48	96	1	202	57	2	3	35	1.31
95438--95559	6	19.7	6	69	19	65	58	2	4	35	1.31
104639--104700	22	3.0	21	83	4	81	24	35	24	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104640--104720	43	1.9	42	82	7	101	24	35	23	16	1.94

Tables:   1

The End!