genome.fa.s8908.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008908.1 Hibiscus syriacus cultivar Beakdansim tig00112205_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  345752

Tables:   1   2   

This is table  2  of  2  ( 179 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235097--235178	21	3.8	22	72	15	64	45	1	0	53	1.08
235302--235435	29	4.6	29	78	16	118	50	0	1	47	1.15
235326--235435	28	3.8	28	79	18	109	51	0	0	46	1.13
235449--235525	23	3.3	24	80	7	79	50	0	1	48	1.09
235725--235819	42	2.3	42	92	0	154	50	16	14	17	1.78
262002--262046	2	22.5	2	100	0	90	51	0	0	48	1.00
263510--264075	256	2.2	254	82	4	676	34	16	15	32	1.91
264243--264291	20	2.5	20	93	0	89	28	20	20	30	1.98
268161--268202	2	21.5	2	95	4	77	52	0	47	0	1.00
287169--287217	23	2.1	23	84	0	62	32	2	6	59	1.34
290356--290400	21	2.1	21	91	0	72	22	22	31	24	1.99
290363--290406	21	2.1	21	86	0	61	25	22	27	25	2.00
293293--293406	31	3.7	31	93	0	201	25	19	15	39	1.91
299092--299134	22	2.0	22	100	0	86	51	13	0	34	1.42
299179--299223	22	2.0	22	83	8	56	48	15	0	35	1.45
299097--299618	80	6.4	80	83	10	650	52	13	0	33	1.41
299114--299787	112	6.2	109	77	12	706	52	13	0	33	1.41
299275--299354	14	5.0	16	69	22	69	55	10	0	35	1.34
299274--299596	32	9.5	32	71	20	176	53	12	0	34	1.38
299082--299676	80	7.4	79	76	16	509	52	13	0	34	1.40
299338--299398	22	2.8	22	94	0	113	50	11	0	37	1.39
299440--299491	18	3.1	18	68	21	58	57	15	0	26	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299416--299464	22	2.2	22	88	3	71	55	14	0	30	1.40
299520--299577	18	3.4	18	70	18	61	56	13	0	29	1.38
299472--299545	22	3.2	22	70	16	60	55	17	0	27	1.42
299580--299644	22	3.0	22	93	0	112	53	10	0	35	1.36
299306--299810	220	2.4	213	86	8	713	52	12	0	34	1.40
299624--299709	32	2.7	32	96	0	154	53	11	0	34	1.37
299353--299868	242	2.2	239	81	10	576	52	12	0	34	1.39
299690--299764	22	3.2	22	75	14	69	54	16	0	29	1.42
299736--299833	32	3.4	31	71	26	106	52	11	0	36	1.38
299499--299833	54	6.1	54	75	12	317	53	12	0	34	1.39
299770--299818	22	2.2	22	85	3	62	53	14	0	32	1.41
299813--299930	15	7.5	15	78	13	112	50	2	0	45	1.21
299759--299915	67	2.3	67	84	9	187	49	6	0	43	1.32
299681--299900	54	4.4	49	76	15	152	50	10	0	39	1.40
301502--301534	17	1.9	17	88	11	50	42	0	6	51	1.26
301470--301537	15	4.5	15	70	23	52	47	1	2	48	1.26
313972--314014	22	2.0	22	100	0	86	51	13	0	34	1.42
313999--314055	18	3.4	18	67	18	59	54	14	0	31	1.40
313974--314022	22	2.2	22	88	3	71	55	14	0	30	1.40
313994--314154	32	5.3	32	84	13	241	53	10	0	36	1.36
314029--314133	55	1.9	55	100	0	210	54	11	0	34	1.37
313962--314154	87	2.2	86	97	0	359	53	10	0	36	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314104--314223	15	7.5	15	71	19	91	52	4	0	43	1.20
316218--316266	6	8.2	6	97	0	89	30	0	18	51	1.47
316259--316461	6	33.8	6	99	0	397	16	15	33	33	1.91
316800--316868	6	11.7	6	98	1	131	17	14	17	50	1.78
317757--317799	21	2.0	21	86	0	59	30	27	25	16	1.97
317779--317929	67	2.2	68	84	3	189	28	25	27	18	1.98
318231--318302	29	2.5	29	90	0	108	37	11	12	38	1.79
318594--318663	23	3.0	23	100	0	140	22	25	25	25	2.00
324703--324745	21	2.0	21	86	0	59	30	27	25	16	1.97
324725--324879	69	2.2	69	83	2	186	27	27	27	18	1.98
325182--325253	29	2.5	29	90	0	108	37	11	12	38	1.79
325545--325614	23	3.0	23	100	0	140	22	25	25	25	2.00
329922--329946	2	12.5	2	100	0	50	0	48	0	52	1.00
334914--334946	16	1.9	18	88	11	52	15	45	9	30	1.77
336526--336570	7	6.4	7	94	0	81	15	0	37	46	1.46

Tables:   1   2

The End!