genome.fa.s8929.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008929.1 Hibiscus syriacus cultivar Beakdansim tig00112234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  268382

Tables:   1   2   

This is table  2  of  2  ( 172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213219--213268	20	2.5	20	80	0	73	22	18	22	38	1.94
214131--214184	24	2.2	24	90	0	81	22	16	20	40	1.91
214359--214395	12	3.1	12	100	0	74	72	0	27	0	0.84
216689--216786	19	5.7	19	67	22	81	44	18	24	12	1.84
216689--216782	33	2.8	33	96	0	170	44	18	24	12	1.84
216812--216857	19	2.4	19	96	0	83	13	19	21	45	1.84
216964--217000	14	2.6	14	91	0	65	45	24	0	29	1.53
218357--218423	21	3.2	21	68	4	55	19	20	35	23	1.95
218357--218479	42	2.9	41	79	7	113	22	18	36	21	1.95
220467--220588	20	6.8	19	69	20	84	43	20	23	12	1.86
220516--220571	14	3.6	14	74	21	58	39	25	25	10	1.87
220492--220588	33	2.9	33	95	1	167	41	22	24	11	1.87
220600--220652	19	2.7	19	91	2	79	11	18	24	45	1.82
221175--221246	20	3.5	20	86	5	83	22	20	20	36	1.96
221236--221308	21	3.5	21	79	3	76	36	17	21	23	1.94
221318--221366	20	2.4	21	79	3	55	20	20	16	42	1.89
223573--223607	2	17.5	2	100	0	70	51	0	0	48	1.00
224375--224431	25	2.3	25	96	0	105	35	17	12	35	1.87
225251--225307	30	1.9	30	82	7	71	47	3	0	49	1.18
226606--226645	19	2.1	19	90	0	62	45	5	22	27	1.73
226946--227022	34	2.1	37	84	13	99	45	1	9	44	1.43
227000--227108	13	8.7	13	73	17	79	40	0	8	51	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227010--227210	37	5.3	37	84	6	233	41	1	6	50	1.38
227221--227286	4	15.8	4	76	14	62	25	3	0	71	1.01
227235--227294	17	3.6	17	76	17	63	25	1	0	73	0.93
227227--227286	13	4.8	12	80	10	57	25	1	0	73	0.93
233616--233720	49	2.1	49	98	0	201	34	16	31	18	1.93
237547--237594	7	6.9	7	83	7	53	81	0	16	2	0.79
237547--237594	14	3.4	14	85	5	62	81	0	16	2	0.79
237555--237604	13	4.1	12	83	16	59	80	2	16	2	0.91
237555--237605	26	2.0	25	85	11	68	78	1	15	3	0.99
240058--240219	36	4.5	36	88	1	234	25	20	14	39	1.91
240136--240198	21	3.3	21	66	25	66	25	20	12	41	1.88
240058--240392	73	4.7	72	81	9	346	25	19	14	41	1.89
240234--240392	37	4.4	36	89	3	239	25	18	13	42	1.88
240048--240392	174	2.0	175	94	1	604	25	18	14	41	1.89
240378--240492	33	3.6	32	84	14	157	39	18	10	32	1.84
240394--240486	29	3.1	29	89	7	132	40	16	9	33	1.81
240891--240980	34	2.5	36	91	7	139	43	0	11	45	1.39
240984--241008	13	1.9	13	100	0	50	40	8	8	44	1.63
241103--241162	13	4.7	13	70	12	52	43	0	6	50	1.28
241047--241262	38	5.7	38	81	9	228	44	2	6	47	1.40
241047--241246	77	2.6	76	85	6	269	44	2	5	47	1.39
241273--241330	4	13.8	4	79	13	55	24	5	0	70	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242792--242834	13	3.3	13	90	6	52	20	0	4	74	1.00
242792--242832	4	9.8	4	84	10	55	19	0	4	75	0.98
242792--242832	17	2.4	17	88	8	57	19	0	4	75	0.98
244981--245045	30	2.2	30	83	10	80	29	3	29	38	1.72
246625--246903	36	7.8	36	91	1	443	30	24	26	18	1.98
247081--247145	30	2.2	30	83	10	80	29	3	27	40	1.71
255622--255828	111	1.9	103	83	7	261	31	12	20	34	1.90
255723--255967	134	1.8	133	88	1	373	35	12	18	33	1.88

Tables:   1   2

The End!