genome.fa.s8932.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008932.1 Hibiscus syriacus cultivar Beakdansim tig00112243_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  464758

Tables:   1   2   

This is table  2  of  2  ( 229 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202538--202610	20	3.9	20	72	17	75	26	50	8	15	1.71
202532--202609	35	2.2	35	100	0	156	25	51	8	14	1.71
206345--206397	23	2.3	23	100	0	106	20	15	13	50	1.76
208616--208692	31	2.5	31	100	0	154	40	10	16	32	1.83
215028--215118	37	2.5	37	98	0	173	38	12	17	31	1.87
215461--215501	21	2.0	20	90	4	64	31	21	26	19	1.97
218352--218561	76	2.7	77	88	2	289	24	32	23	19	1.98
224331--224412	21	3.8	22	80	6	87	21	36	24	17	1.94
226349--226396	17	2.9	17	80	17	57	14	0	27	58	1.37
226969--227174	76	2.7	75	87	3	281	24	31	23	20	1.98
229984--230036	24	2.2	24	89	0	79	20	16	24	37	1.93
231020--231066	18	2.6	19	86	10	71	61	4	6	27	1.39
231658--231692	18	1.9	18	88	0	52	60	5	17	17	1.55
236239--236586	190	1.8	189	88	1	527	46	9	5	38	1.59
238353--238379	14	1.9	14	100	0	54	48	0	0	51	1.00
238870--239007	36	3.8	36	97	0	258	39	17	10	32	1.84
240469--240504	14	2.5	14	90	4	54	19	8	0	72	1.10
246864--246969	40	2.7	40	86	2	133	20	41	16	20	1.90
249426--249479	25	2.3	23	78	15	56	59	9	1	29	1.39
253035--253073	21	1.9	19	85	10	51	30	15	2	51	1.57
254757--254814	20	2.9	20	73	14	57	58	3	0	37	1.15
254750--254824	33	2.3	31	80	17	89	57	6	0	36	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254769--254835	16	4.2	16	75	11	57	58	4	1	35	1.28
256541--256575	15	2.3	15	95	0	61	17	11	37	34	1.85
257430--257467	19	2.1	19	85	5	51	39	5	0	55	1.23
257544--257620	32	2.4	33	84	6	95	16	14	25	42	1.86
257618--257653	16	2.2	16	90	0	54	16	13	19	50	1.79
257771--257802	14	2.3	14	100	0	64	12	15	40	31	1.85
260183--260215	7	4.9	7	88	3	50	3	15	0	81	0.80
260178--260220	14	3.1	14	86	6	61	9	16	0	74	1.06
262050--262113	33	1.9	33	93	0	110	25	18	15	40	1.90
268208--268243	15	2.5	14	86	8	54	22	25	30	22	1.99
281768--281827	25	2.4	25	85	0	75	26	5	0	68	1.10
281769--281827	12	4.7	13	77	8	59	25	5	0	69	1.09
287013--287104	13	7.5	13	80	11	97	18	46	19	15	1.84
287078--287130	8	7.2	8	80	18	62	16	35	24	22	1.95
287097--287130	15	2.3	15	100	0	68	14	29	26	29	1.95
288416--288450	18	1.9	18	88	0	52	54	0	17	28	1.43
289933--290011	30	2.6	31	78	6	81	13	29	32	24	1.94
292050--292130	13	6.5	13	81	8	96	18	45	19	16	1.85
292036--292060	5	5.0	5	100	0	50	20	60	20	0	1.37
292104--292168	8	8.5	8	79	19	68	15	36	26	21	1.93
292123--292159	7	5.0	7	90	9	56	13	32	27	27	1.94
292123--292168	15	2.9	15	93	6	74	13	32	28	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293448--293482	18	1.9	18	88	0	52	54	0	17	28	1.43
296583--296619	7	5.0	7	90	9	56	27	27	32	13	1.94
296574--296638	8	8.5	8	77	19	68	21	26	36	15	1.93
296574--296619	15	2.9	15	93	6	74	26	28	32	13	1.93
296612--296692	13	6.5	13	81	8	96	16	19	45	18	1.85
296682--296706	5	5.0	5	100	0	50	0	20	60	20	1.37
298202--298277	31	2.4	31	80	2	89	26	31	27	14	1.95
298155--298277	63	2.0	63	82	6	151	25	29	28	17	1.97
299764--299798	18	1.9	18	88	0	52	28	17	0	54	1.43
301121--301169	13	3.8	13	86	0	71	18	18	44	18	1.87
301077--301121	8	5.5	8	89	10	65	22	28	35	13	1.92
303624--303727	37	2.8	37	82	0	118	41	11	12	34	1.79
304411--304465	22	2.5	22	80	11	60	29	3	0	67	1.08
304432--304499	22	3.2	21	75	15	68	25	2	0	72	0.99
304411--304499	43	2.1	43	83	8	110	28	4	0	67	1.10
304358--304500	22	6.6	21	67	26	59	29	4	1	65	1.20
304585--304640	19	2.9	19	75	19	62	23	8	1	66	1.30
316697--316831	60	2.2	60	81	2	155	31	16	17	34	1.92
317570--317632	31	2.2	28	81	15	76	20	22	28	28	1.98
318081--318108	14	2.0	14	100	0	56	21	14	21	42	1.88
319906--320142	115	2.1	115	100	0	474	42	4	19	34	1.71
325238--325403	51	3.3	51	92	0	278	23	15	15	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325346--325538	69	2.8	69	87	2	284	23	15	16	44	1.86
325484--325618	51	2.8	48	82	8	166	22	13	17	46	1.82
334895--335037	60	2.4	58	83	5	178	29	18	19	32	1.95
336131--336158	14	2.0	14	100	0	56	21	14	21	42	1.88
336732--336780	20	2.5	20	96	0	89	20	24	12	42	1.86
360549--360647	3	33.3	3	97	2	191	34	0	0	65	0.93
362602--362655	24	2.2	24	86	0	72	27	44	18	9	1.80
365926--365968	17	2.5	17	85	11	52	30	0	0	69	0.88
366858--366890	16	2.0	17	88	5	50	42	0	0	57	0.98
367046--367177	65	2.0	65	98	0	255	45	9	7	37	1.66
380560--380584	6	4.2	6	100	0	50	16	20	32	32	1.94
380735--380809	25	3.0	25	94	0	123	26	22	14	36	1.93
383287--383321	2	17.5	2	93	0	61	54	45	0	0	0.99
384198--384229	12	2.6	13	85	14	50	25	28	0	46	1.53
389356--389386	15	2.1	15	93	0	53	35	22	6	35	1.80
402089--402166	40	2.0	40	92	0	129	34	14	23	28	1.93
402208--402254	14	3.4	14	81	0	58	12	6	17	63	1.48
407367--407443	20	3.8	20	79	6	75	36	23	11	28	1.90
407461--407556	21	4.6	21	71	7	72	38	22	13	25	1.91
410773--410820	23	2.1	23	88	0	69	35	12	18	33	1.89
411296--411368	23	3.2	23	94	0	119	39	21	4	34	1.73
411727--411778	23	2.3	22	90	6	77	44	19	1	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411737--411799	23	2.7	23	90	0	90	39	19	4	36	1.72
411131--412422	430	3.0	430	96	1	2347	39	12	7	40	1.71
412167--412229	23	2.7	23	92	0	99	38	20	4	36	1.74
412493--412557	25	2.6	25	97	0	121	36	12	10	40	1.78
415026--415510	183	2.7	183	95	1	868	32	16	14	35	1.90
417381--418202	199	4.1	200	96	1	1514	30	18	15	36	1.91
418321--418369	19	2.6	19	93	0	80	57	10	2	30	1.43
420253--420296	21	2.1	21	91	0	70	15	31	11	40	1.83
421034--421527	228	2.2	228	95	1	893	40	7	7	44	1.62
428770--428795	2	13.0	2	100	0	52	50	0	0	50	1.00
428817--428906	25	3.5	25	73	19	62	52	0	5	42	1.25
428840--428905	27	2.5	26	78	14	71	53	0	4	42	1.21
429139--429165	2	13.5	2	100	0	54	51	0	0	48	1.00
429768--429826	30	2.0	30	93	3	102	45	10	15	28	1.78
435459--435935	55	8.8	55	84	3	486	29	23	14	32	1.95
452314--453985	834	2.0	831	96	2	2827	35	13	19	31	1.91
460510--460553	21	2.1	21	100	0	88	18	13	34	34	1.90
460587--460661	32	2.2	36	80	20	90	34	5	1	58	1.29
461508--461554	17	2.7	17	90	3	67	40	10	23	25	1.87
463839--463922	20	4.3	20	88	8	129	48	4	21	25	1.69
463842--463912	37	1.9	37	97	0	133	47	5	21	25	1.72

Tables:   1   2

The End!