Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008950.1 Hibiscus syriacus cultivar Beakdansim tig00112276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  471712

Tables:   1   2   

This is table  2  of  2  ( 189 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
376922--377027
23
4.9
22
69
20
80
36
18
0
43
1.57
377162--377664
138
3.7
138
96
0
918
31
24
22
21
1.98
377162--377664
275
1.8
276
95
0
918
31
24
22
21
1.98
380820--380861
21
2.0
21
85
0
57
50
0
0
50
1.00
386529--386559
2
15.5
2
93
0
53
51
0
0
48
1.00
391811--391854
2
22.0
2
100
0
88
50
0
0
50
1.00
392224--392269
14
3.1
14
87
9
56
63
0
0
36
0.95
392224--392254
7
4.4
7
91
0
53
58
0
0
41
0.98
398252--398324
3
25.3
3
89
8
116
36
0
0
63
0.95
402040--402081
7
6.0
7
81
8
50
14
16
14
54
1.71
402040--402081
15
3.0
14
83
10
50
14
16
14
54
1.71
408395--408569
76
2.3
76
86
2
235
32
13
21
33
1.91
409728--409783
22
2.5
23
77
13
64
35
10
10
42
1.74
410440--411103
45
14.8
45
90
4
984
23
22
19
34
1.96
410547--411103
91
6.1
90
93
1
898
23
22
19
34
1.96
411222--411314
3
32.3
3
91
8
158
35
0
0
64
0.94
415214--415244
2
15.5
2
100
0
62
51
0
0
48
1.00
415376--415429
28
1.9
28
85
7
74
64
7
1
25
1.30
417299--417667
106
3.5
106
94
0
632
21
19
25
33
1.97
418828--418857
11
2.8
11
95
5
53
0
20
0
80
0.72
420198--420233
17
2.1
17
94
0
63
13
41
19
25
1.88
425961--426014
23
2.3
23
81
15
65
70
9
5
14
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
428015--428068
28
1.9
28
85
7
74
64
7
1
25
1.30
428511--428546
17
2.1
17
100
0
72
16
30
36
16
1.91
434545--434574
14
2.1
14
93
0
51
30
0
10
60
1.30
434690--434790
34
3.0
34
88
0
157
38
3
4
52
1.42
435308--435347
21
1.9
21
89
0
62
25
22
35
17
1.95
435346--435430
42
2.0
42
81
0
98
23
21
34
21
1.97
437499--437597
21
4.6
21
83
7
103
40
19
39
1
1.58
437988--438101
43
2.6
44
80
6
108
37
19
17
25
1.93
438184--438242
15
3.9
15
75
18
50
10
16
27
45
1.80
438353--438447
30
3.2
30
80
5
88
57
0
0
42
0.98
443924--443964
18
2.3
18
95
0
73
29
7
26
36
1.83
450783--450817
18
1.9
18
94
0
61
57
0
0
42
0.99
455102--455133
7
4.6
7
96
0
55
43
0
0
56
0.99
455141--455174
16
2.1
17
88
5
52
58
0
2
38
1.13
457090--457136
18
2.5
19
75
6
51
68
0
23
8
1.17
458453--458504
5
10.4
5
80
12
54
75
1
0
23
0.91
458456--458507
15
3.4
15
82
10
61
75
1
0
23
0.91
458509--458842
37
9.1
36
75
14
220
44
6
4
44
1.51
458546--458812
72
3.7
70
83
11
287
44
7
5
42
1.54
459562--460267
165
4.3
161
82
6
707
24
21
25
29
1.99
459567--460245
249
2.7
246
86
4
916
24
21
25
29
1.99
463592--463636
19
2.4
19
88
3
65
66
11
13
8
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
464257--464289
17
1.9
17
93
0
57
72
9
12
6
1.26
465238--465262
12
2.1
12
100
0
50
60
0
0
40
0.97
465378--465424
18
2.5
19
75
6
51
68
0
23
8
1.17
466719--466777
5
11.4
5
79
13
50
74
1
0
23
0.91
466730--466780
3
17.0
3
80
8
59
74
0
0
25
0.82
466704--466777
22
3.4
22
78
15
66
72
2
2
21
1.09
466707--466780
12
6.2
12
81
10
64
72
1
2
22
1.04
466732--466780
19
2.7
19
84
6
66
75
0
0
24
0.80
466766--466914
36
4.1
37
77
8
94
49
6
2
42
1.38
466787--467079
71
4.1
70
78
13
219
45
7
4
43
1.52
466819--467112
36
8.1
36
72
18
184
43
6
5
44
1.52
466819--467085
71
3.7
72
81
10
268
44
7
5
43
1.54
466781--467112
180
1.8
179
82
12
421
43
6
4
44
1.51
467113--467159
24
2.0
24
95
0
85
46
6
2
44
1.40
467113--467186
28
2.8
27
82
13
84
44
5
5
44
1.49
467113--467172
24
2.3
28
86
11
83
45
6
5
43
1.52
468452--468493
22
2.0
22
85
4
59
57
0
4
38
1.20
468561--468603
14
3.1
14
73
6
52
58
0
4
37
1.19
468562--468607
15
3.3
15
73
14
53
54
0
4
41
1.20
470000--470056
3
19.3
3
84
10
73
59
0
0
40
0.97
470002--470056
11
5.5
10
81
14
69
60
0
0
40
0.97
470000--470056
17
3.4
17
80
7
64
59
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
470225--470960
74
9.9
76
89
5
1100
35
21
20
22
1.96
470225--470960
149
5.0
151
91
5
1112
35
21
20
22
1.96
471627--471699
21
3.5
21
83
3
103
39
12
12
35
1.80

Tables:   1   2

The End!