genome.fa.s8951.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008951.1 Hibiscus syriacus cultivar Beakdansim tig00112277_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153195

Tables:   1   2   

This is table  1  of  2  ( 135 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2236--2380	40	3.7	40	79	9	136	41	20	15	22	1.90
2251--2411	60	2.7	59	80	6	189	40	20	18	21	1.92
2251--2419	20	8.4	20	76	7	146	40	19	17	21	1.91
5027--5125	42	2.4	42	80	10	121	27	31	19	22	1.98
6524--6560	14	2.6	14	95	0	65	27	0	24	48	1.51
6524--6575	14	3.7	14	84	0	59	26	0	23	50	1.50
6524--6577	28	1.9	28	84	0	72	29	0	22	48	1.51
6672--6709	20	1.9	20	100	0	76	42	26	18	13	1.87
6948--7034	39	2.2	39	97	0	165	17	14	20	47	1.83
7346--7384	18	2.2	18	90	0	60	48	10	5	35	1.59
7803--7851	20	2.5	20	82	0	71	42	22	18	16	1.88
8222--8262	18	2.3	18	91	0	64	19	2	21	56	1.54
10527--10586	24	2.5	24	83	0	84	38	18	18	25	1.93
11280--11317	16	2.5	15	84	12	51	65	0	5	28	1.14
11533--11579	20	2.3	20	92	0	76	25	17	23	34	1.96
12348--12391	3	14.7	3	95	0	79	70	0	0	29	0.88
12447--12494	19	2.5	19	80	12	62	77	0	10	12	1.00
12752--12812	2	31.0	2	96	3	115	49	0	0	50	1.00
12833--12894	22	2.7	22	73	16	63	67	1	4	25	1.19
14511--14542	5	6.4	5	96	0	55	21	0	0	78	0.76
16000--16051	20	2.6	20	96	0	95	38	26	13	21	1.90
16107--16300	20	9.6	20	76	8	76	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16103--16300	40	5.0	39	81	4	200	35	26	19	19	1.95
16107--16299	60	3.2	60	83	0	251	35	25	19	19	1.95
16443--16496	22	2.5	22	78	3	65	24	38	16	20	1.92
16676--16745	33	2.2	32	89	2	104	11	22	18	47	1.81
16866--16920	14	3.6	14	73	21	56	41	23	25	9	1.83
16866--16936	33	2.2	33	94	0	124	43	25	22	8	1.81
16932--17029	19	5.7	19	70	22	81	10	24	22	42	1.84
16954--17043	14	5.7	14	74	23	81	8	25	23	42	1.83
16937--17051	33	3.5	33	95	0	212	9	24	20	45	1.81
18727--18883	85	1.9	84	86	9	230	25	13	17	43	1.85
18842--18964	60	2.0	61	93	4	214	26	9	17	47	1.78
18903--19242	91	3.7	92	94	4	602	22	12	18	45	1.83
19286--19415	19	7.3	19	74	18	118	46	28	16	8	1.77
19322--19415	33	2.8	32	90	6	143	46	27	18	7	1.75
19411--19545	19	7.6	19	75	16	128	11	19	23	45	1.82
19433--19489	14	3.7	14	77	20	60	10	21	22	45	1.82
19416--19508	33	2.8	33	95	0	168	10	20	21	47	1.80
21377--21407	15	2.1	15	100	0	62	41	6	32	19	1.77
21441--21476	14	2.6	14	95	0	63	33	0	22	44	1.53
21579--21871	19	16.5	19	82	13	376	14	20	18	47	1.83
24149--24173	12	2.1	12	100	0	50	0	28	0	72	0.86
24348--24394	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25073--25441	20	18.5	20	86	5	451	20	18	26	34	1.96
26103--26156	20	2.8	18	71	17	54	66	1	9	22	1.30
26228--26347	18	6.3	19	70	18	72	62	0	4	32	1.20
26256--26297	6	7.0	6	84	10	50	64	0	0	35	0.94
26475--26508	2	17.5	2	93	6	61	52	0	0	47	1.00
27018--27113	37	2.6	37	88	0	129	31	11	15	41	1.83
27864--29033	106	11.0	106	93	0	1894	21	18	25	34	1.96
29994--30047	22	2.5	22	96	0	99	25	12	24	37	1.91
30658--30696	18	2.1	19	85	4	53	2	10	7	79	1.02
30652--30703	24	2.2	24	86	6	70	1	11	5	80	0.96
30652--30703	8	6.5	8	73	8	52	1	11	5	80	0.96
35446--35517	22	3.3	22	76	18	62	63	0	1	34	1.03
35462--35521	14	4.4	13	83	10	57	63	0	0	36	0.95
35460--35517	18	3.3	19	77	20	63	63	0	0	36	0.94
35487--35519	2	16.5	2	93	0	57	54	0	0	45	0.99
35462--35642	6	29.8	6	68	20	51	62	2	3	32	1.23
35747--35815	23	2.8	24	78	18	63	71	4	5	18	1.24
36243--36336	37	2.5	37	79	5	100	32	9	13	43	1.77
39846--39923	41	1.9	41	97	0	147	34	12	14	38	1.84
43438--43517	33	2.4	33	81	6	90	30	11	31	27	1.91
43712--43805	33	2.8	33	80	4	91	32	17	24	25	1.96
43518--44021	168	3.0	168	94	0	857	28	20	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43749--43827	33	2.4	33	84	0	95	30	17	25	26	1.97
44450--45595	201	5.7	200	78	4	1004	30	19	21	28	1.98
44591--45342	399	1.9	399	81	3	933	29	19	21	29	1.98
46721--46847	5	25.4	5	100	0	254	59	0	0	40	0.97
47261--47286	2	13.0	2	100	0	52	50	0	0	50	1.00
50255--50286	2	16.0	2	100	0	64	50	0	0	50	1.00
51000--51045	2	23.0	2	95	0	83	52	0	0	47	1.00
53151--53290	70	2.0	70	91	2	228	27	23	10	38	1.87
53543--53639	3	31.7	3	83	4	113	39	2	0	58	1.10
57243--57295	14	3.7	14	79	2	52	22	15	7	54	1.65
60178--60229	2	26.0	2	100	0	104	50	0	0	50	1.00
62811--63110	115	2.6	115	99	0	591	32	14	19	34	1.92
65364--65439	40	1.9	40	91	0	125	31	14	23	30	1.94
65830--65884	22	2.5	22	87	0	83	34	12	12	40	1.82
66286--66608	113	2.9	113	87	3	429	39	14	18	28	1.90
66548--66647	40	2.5	39	95	1	173	50	10	21	19	1.76
66430--66758	152	2.2	153	86	4	452	41	13	19	26	1.88
66323--66871	265	2.1	266	96	0	1010	40	14	18	27	1.89
66588--67003	226	1.8	227	86	4	597	38	14	18	29	1.89
66584--67003	113	3.7	113	84	4	524	38	14	18	28	1.89
67226--67313	3	28.7	3	81	4	95	39	2	0	57	1.11
73479--73528	22	2.4	21	81	12	59	60	16	6	18	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79859--79940	38	2.2	38	81	0	101	24	19	12	43	1.85
83364--83413	26	1.9	26	95	0	91	28	22	18	32	1.97
89283--89363	24	3.5	24	70	20	75	22	24	23	29	1.99
89284--89386	44	2.3	44	82	9	138	22	26	22	29	1.99
90911--90954	21	2.1	21	82	0	52	11	36	15	36	1.84
91973--92030	20	2.9	20	86	0	80	32	36	12	18	1.88
95636--95671	18	2.0	18	88	0	54	13	13	2	69	1.30
97967--98063	21	4.6	21	77	8	90	49	16	11	22	1.77
97965--98068	43	2.5	41	79	7	120	50	15	11	23	1.76
98053--98103	20	2.5	20	90	0	75	49	13	5	31	1.66
104230--105326	106	10.4	106	92	2	1725	33	25	18	22	1.97
108008--108080	32	2.2	32	81	11	87	34	35	6	23	1.81
116486--116516	16	2.0	15	93	6	53	51	0	9	38	1.35
119942--119982	20	2.0	21	86	13	59	43	0	0	56	0.99
119951--120009	21	2.9	19	80	14	64	47	3	0	49	1.18
119956--120006	22	2.4	21	83	6	59	49	3	0	47	1.20
127856--127896	2	21.0	2	95	5	75	51	0	0	48	1.00
131307--131340	16	2.1	16	94	0	59	32	8	26	32	1.87
132091--132122	15	2.1	16	94	5	57	50	18	25	6	1.70
136623--136653	4	7.8	4	100	0	62	25	0	25	48	1.52
137358--137410	22	2.4	22	90	6	81	22	26	22	28	1.99
139451--139496	3	14.7	3	93	4	74	65	2	32	0	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141148--141201	20	2.7	20	91	0	81	53	18	16	11	1.72
141236--141446	20	10.4	20	87	3	269	36	18	25	19	1.94
141215--141446	83	2.8	83	87	1	335	36	18	25	19	1.94
141435--141478	20	2.2	20	91	0	70	54	15	18	11	1.70
141276--141466	60	3.1	59	75	10	161	38	18	25	17	1.92
141556--141593	6	6.5	6	96	3	69	31	52	15	0	1.43
142288--142343	6	9.5	6	98	1	105	0	16	51	32	1.44
142421--142464	20	2.2	20	91	0	70	11	18	15	54	1.70
142453--142704	20	12.3	20	86	3	270	19	25	18	36	1.94
142453--142683	40	5.7	40	87	3	300	19	25	18	36	1.94

Tables:   1   2