genome.fa.s8954.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008954.1 Hibiscus syriacus cultivar Beakdansim tig00112282_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  488355

Tables:   1   2   3   

This is table  3  of  3  ( 325 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425490--425517	2	14.0	2	100	0	56	50	0	0	50	1.00
425497--425758	39	6.8	38	82	10	295	45	6	3	44	1.47
425499--425746	75	3.2	75	90	4	363	45	6	3	43	1.48
425779--425844	35	1.9	33	90	6	105	42	7	1	48	1.40
426475--427637	169	6.9	169	86	3	1325	23	18	23	34	1.96
426461--427624	421	2.8	419	87	3	1534	23	18	23	34	1.96
428388--428617	87	2.7	86	85	9	299	30	20	18	30	1.96
428988--429038	22	2.3	23	86	3	68	39	15	25	19	1.91
428995--429038	22	2.0	22	90	4	70	36	18	27	18	1.94
429613--429712	46	2.2	45	89	1	146	30	24	8	38	1.84
435283--435340	19	3.0	20	73	21	59	77	1	5	15	1.02
435257--435333	23	3.3	23	76	7	75	79	0	7	12	0.94
435259--435321	33	1.9	32	81	9	74	80	0	7	11	0.89
435284--435353	27	2.7	25	79	14	70	77	1	7	14	1.05
435742--435767	2	13.0	2	100	0	52	0	50	0	50	1.00
436622--436657	3	12.0	3	100	0	72	66	0	0	33	0.92
436772--436934	36	4.4	36	88	4	227	46	6	3	42	1.47
436772--436934	75	2.2	73	87	5	229	46	6	3	42	1.47
437055--437106	20	2.6	20	96	0	95	38	26	13	21	1.90
437096--437194	21	4.8	20	72	6	72	36	23	19	21	1.95
437161--437354	20	9.6	20	81	5	221	35	25	19	19	1.95
437161--437354	60	3.2	60	83	0	253	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437736--437806	33	2.2	33	92	0	115	11	22	18	47	1.80
437927--437981	14	3.6	14	73	21	56	40	23	27	9	1.85
437927--437997	33	2.2	33	92	0	115	42	25	23	8	1.82
437993--438090	19	5.7	19	70	22	81	10	24	22	42	1.84
438015--438104	14	5.7	14	74	23	81	8	25	23	42	1.83
437998--438112	33	3.5	33	95	0	212	9	24	20	45	1.81
439810--440191	185	2.1	186	98	0	748	22	12	18	46	1.83
439810--440189	93	4.1	93	98	0	744	22	12	18	46	1.83
440233--440361	19	7.3	19	75	17	125	45	28	17	8	1.77
440269--440361	33	2.8	32	91	4	150	46	27	18	7	1.76
440233--440361	52	2.5	52	74	14	140	45	28	17	8	1.77
440357--440491	19	7.6	19	76	16	137	10	19	24	45	1.81
440379--440435	14	3.7	14	77	20	60	8	21	24	45	1.80
440362--440454	33	2.8	33	98	0	177	9	20	22	47	1.79
442305--442377	38	1.9	38	97	0	137	28	1	16	53	1.51
442300--442364	19	3.4	19	64	8	51	24	1	15	58	1.46
442359--442393	13	2.6	14	90	4	54	31	0	22	45	1.53
442500--442601	19	5.6	19	84	13	151	44	17	23	14	1.86
442608--442955	19	19.8	19	79	16	405	14	20	17	46	1.84
442608--442927	52	6.0	52	93	4	541	15	21	16	46	1.83
442631--442955	71	4.6	72	82	13	387	14	20	17	47	1.83
442608--442927	161	2.0	157	93	3	543	15	21	16	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442649--442955	33	8.8	33	80	12	280	14	20	17	47	1.82
445261--445285	12	2.1	12	100	0	50	0	28	0	72	0.86
445460--445506	24	2.0	24	87	8	69	38	21	14	25	1.92
446180--446548	20	18.5	20	86	4	458	20	18	26	34	1.96
446756--446840	40	2.2	40	89	4	129	48	5	2	43	1.40
446871--446942	37	2.0	35	81	13	83	41	8	4	45	1.53
454004--454047	13	3.4	13	87	6	63	75	4	4	15	1.14
454028--454063	19	1.9	18	88	5	54	77	2	5	13	1.05
455382--455450	30	2.3	31	85	7	88	43	4	5	46	1.47
455489--455731	36	6.9	36	73	14	193	44	7	4	44	1.51
455523--455598	27	2.8	27	82	7	82	43	2	6	47	1.43
455552--455608	27	2.1	28	83	9	73	40	3	7	49	1.47
455538--455728	75	2.5	75	81	5	199	45	6	4	43	1.49
455594--455808	76	2.8	75	78	8	186	42	10	4	42	1.59
455810--455860	2	26.5	2	81	15	54	54	0	3	41	1.19
455810--455860	20	2.7	20	90	6	79	54	0	3	41	1.19
456458--457347	84	10.8	84	78	6	694	24	20	25	29	1.99
456450--457372	165	5.6	162	79	7	691	24	20	25	29	1.99
456598--457347	248	3.0	247	91	2	1159	24	20	25	29	1.99
463930--463998	30	2.3	31	85	7	88	42	4	7	46	1.51
464037--464279	36	6.9	36	73	14	193	44	7	4	44	1.51
464071--464146	27	2.8	27	82	7	82	43	2	6	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464100--464156	27	2.1	28	83	9	73	40	3	7	49	1.47
464086--464276	75	2.5	75	81	5	199	45	6	4	43	1.49
464142--464360	75	2.9	76	79	6	203	42	10	4	42	1.58
481118--481221	41	2.6	41	75	13	99	68	2	3	25	1.20
481841--481940	33	2.9	35	88	11	161	27	15	14	44	1.84
482465--483187	105	7.0	105	90	3	1024	22	17	26	34	1.96
482470--483179	209	3.4	206	88	5	983	22	17	26	33	1.96
482465--483188	314	2.3	309	88	5	1068	22	17	26	33	1.96
483820--483976	67	2.4	65	84	5	199	36	8	22	33	1.84
483951--484226	36	7.9	36	77	10	277	39	13	19	27	1.90
483903--484211	137	2.3	136	84	2	406	39	12	19	28	1.88
483987--484174	100	1.9	103	87	3	283	40	13	18	27	1.88
484155--484187	15	2.1	16	88	5	50	39	9	21	30	1.84
484093--484264	71	2.4	72	84	3	215	39	15	20	24	1.91
484704--484739	18	2.0	18	88	0	54	41	30	8	19	1.81
485150--485204	22	2.5	22	100	0	110	23	12	27	36	1.91
485813--485872	29	2.1	28	81	3	66	1	15	10	73	1.17
485844--485917	7	10.3	7	72	16	62	0	14	6	78	0.95
485882--485920	13	2.9	13	85	14	53	0	12	5	82	0.83

Tables:   1   2   3

The End!