genome.fa.s8956.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008956.1 Hibiscus syriacus cultivar Beakdansim tig00112287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140070

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12151--12245	30	3.2	30	75	8	104	61	4	14	20	1.50
14001--14038	3	13.0	3	83	5	51	63	2	2	31	1.22
15249--15292	3	16.0	3	82	17	51	29	0	2	68	1.02
15246--15292	16	3.0	16	81	3	60	29	0	2	68	1.02
15239--15282	23	2.0	23	91	8	74	22	0	4	72	1.02
21253--21329	22	3.5	22	96	0	145	33	11	14	40	1.82
21842--22159	159	2.0	164	86	7	452	34	14	12	38	1.84
22299--22715	113	3.8	110	89	4	585	36	14	20	28	1.92
24382--24451	3	24.3	3	76	16	60	27	2	1	68	1.12
25397--25438	20	2.2	19	86	4	57	33	0	2	64	1.07
25494--25550	29	2.0	29	86	6	80	47	1	0	50	1.11
26304--26347	22	2.0	22	90	0	70	52	6	11	29	1.63
30539--30574	19	1.9	18	88	5	54	52	5	0	41	1.24
30536--30598	27	2.3	28	83	5	76	47	6	1	44	1.38
31468--31496	2	14.5	2	100	0	58	51	0	0	48	1.00
33255--33340	43	2.0	43	97	0	163	34	31	13	19	1.91
34389--34414	2	13.0	2	100	0	52	50	0	0	50	1.00
47741--47803	31	2.0	32	81	12	76	22	4	3	69	1.21
47755--47799	22	2.0	22	83	8	56	20	6	0	73	1.05
48366--48470	19	5.2	19	78	13	102	35	4	27	32	1.78
48886--49337	61	7.6	61	77	9	421	35	23	20	21	1.96
48886--49243	40	8.9	40	88	3	486	34	24	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48886--49299	80	5.2	78	87	4	492	34	23	20	21	1.97
49240--49307	35	1.9	35	84	0	91	36	14	22	26	1.93
51513--51544	15	2.0	17	88	11	50	56	3	25	15	1.54
51591--51636	5	9.2	5	100	0	92	0	0	19	80	0.71
55154--55298	60	2.4	60	80	11	138	34	20	4	40	1.73
66339--66381	22	2.0	21	86	4	59	20	23	30	25	1.99
67065--67132	31	2.2	31	83	0	82	36	8	13	41	1.75
79255--79356	20	5.1	20	89	0	159	26	26	20	26	1.99
79958--79997	19	2.1	19	90	0	62	12	15	22	50	1.77
79975--80038	20	3.3	19	75	14	58	15	14	25	45	1.83
81776--81825	18	2.8	18	100	0	100	32	20	6	42	1.76
81973--82038	20	3.3	20	87	2	89	37	25	19	16	1.93
82108--82172	20	3.2	20	82	0	85	41	23	16	18	1.90
81972--82238	133	2.0	132	91	0	426	36	22	19	22	1.95
82752--82856	21	5.0	21	72	3	68	22	36	18	22	1.95
84256--84317	14	4.3	14	77	6	61	38	0	14	46	1.45
84416--84467	20	2.6	20	84	6	70	42	28	17	11	1.84
84463--84715	20	13.6	20	74	15	213	25	19	21	33	1.97
84463--84715	74	3.4	74	75	8	239	25	19	21	33	1.97
84463--84653	94	2.1	93	92	2	321	24	20	21	32	1.98
84531--84634	34	2.8	37	81	14	117	24	20	23	32	1.98
84550--84707	54	2.9	54	86	2	237	24	18	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84686--84955	140	1.9	140	97	0	513	42	15	13	28	1.84
87325--87376	24	2.2	24	82	0	59	36	21	19	23	1.95
88182--88297	20	5.8	20	86	4	162	25	18	26	29	1.98
89430--89497	24	2.8	24	79	0	73	29	16	17	36	1.92
89426--89507	24	3.4	24	77	0	65	29	13	18	39	1.89
91886--91918	17	1.9	17	88	11	50	39	0	0	60	0.97
91882--91947	26	2.5	26	75	20	66	42	0	1	56	1.08
92380--92410	4	7.8	4	100	0	62	74	0	0	25	0.82
94320--94358	2	20.0	2	94	5	71	51	0	0	48	1.00
96598--96659	22	2.8	22	78	4	72	30	3	1	64	1.19
97118--97418	150	2.0	151	99	0	595	35	17	21	25	1.95
113284--113354	35	2.0	36	88	2	108	23	18	25	32	1.97
115687--115742	18	3.1	18	77	12	69	46	10	21	21	1.81
117471--117507	18	2.1	18	85	14	51	48	0	2	48	1.15
117501--117590	29	3.1	29	96	1	162	44	11	0	44	1.39
120254--120280	12	2.2	12	100	0	54	22	0	0	77	0.76
121641--121759	60	2.0	58	95	3	211	36	25	9	29	1.87
129147--129201	27	2.0	27	92	0	92	54	9	10	25	1.64
129810--129847	3	12.3	3	94	5	67	34	0	0	65	0.93
132512--132543	17	1.9	16	93	6	55	31	0	0	68	0.90
132517--132552	17	2.1	17	89	5	54	36	0	2	61	1.11
136085--136223	60	2.3	61	83	4	167	33	24	5	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136342--136518	60	2.9	59	77	6	169	41	5	20	32	1.75

Tables:   1

The End!