genome.fa.s8961.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008961.1 Hibiscus syriacus cultivar Beakdansim tig00112295_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183149

Tables:   1   2   

This is table  2  of  2  ( 148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154358--154482	33	3.8	33	90	2	182	45	24	20	9	1.81
154530--154600	19	3.6	19	78	3	79	11	21	19	47	1.80
155037--155106	21	3.3	21	68	5	61	24	35	20	20	1.96
154988--155106	42	2.8	42	82	5	116	23	36	17	22	1.95
156451--156486	14	2.6	14	95	0	63	33	0	22	44	1.53
156625--156687	19	3.3	19	86	4	83	44	22	17	15	1.86
156687--156853	33	4.8	33	77	9	172	14	22	18	44	1.86
156683--156792	20	5.9	19	71	13	86	14	21	19	44	1.86
159369--159422	24	2.2	24	93	0	90	40	20	18	20	1.91
159369--159436	24	2.8	24	84	0	64	38	20	17	23	1.93
160285--160335	20	2.5	20	90	6	77	35	23	19	21	1.96
160330--160470	20	6.9	20	83	6	122	21	18	22	37	1.94
160342--160492	20	7.4	21	79	7	118	21	17	23	37	1.94
160342--160470	41	3.2	41	82	1	134	20	17	23	37	1.94
160342--160470	61	2.1	62	82	5	165	20	17	23	37	1.94
160342--160492	41	3.7	41	80	4	128	21	17	23	37	1.94
160561--160614	20	2.7	19	75	8	63	16	18	31	33	1.93
161289--161335	17	2.7	18	80	3	60	42	0	0	57	0.98
161289--161335	18	2.6	19	77	12	55	42	0	0	57	0.98
168685--168725	18	2.3	18	95	0	73	43	19	19	17	1.88
168868--168910	16	2.7	16	100	0	86	25	30	11	32	1.91
173586--173642	24	2.4	24	81	0	78	36	21	17	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173634--173709	23	3.3	23	79	0	71	38	23	18	19	1.93
175456--175490	18	1.9	18	94	0	61	22	20	31	25	1.98
179961--180055	43	2.3	41	85	5	120	55	3	8	32	1.45
180671--180713	19	2.3	18	84	4	50	53	4	2	39	1.34
181049--181084	16	2.2	16	90	9	56	61	0	0	38	0.96
181160--181366	79	2.7	78	86	6	312	52	3	11	32	1.54

Tables:   1   2

The End!