Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008966.1 Hibiscus syriacus cultivar Beakdansim tig00112308_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  265444

Tables:   1   2   

This is table  2  of  2  ( 152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
195251--195301
20
2.6
20
90
3
77
37
13
5
43
1.69
203284--203321
11
3.4
11
92
3
58
86
7
5
0
0.69
203284--203343
23
2.7
22
80
12
61
81
6
5
6
0.98
211896--211927
16
2.0
16
100
0
64
31
12
25
31
1.92
213436--213553
35
3.4
35
83
4
150
27
36
2
33
1.71
217340--217379
19
2.0
20
85
4
55
22
15
0
62
1.32
217665--217702
13
2.9
13
88
0
58
78
0
21
0
0.74
217648--217702
27
2.1
26
86
10
76
78
1
18
1
0.94
221893--221932
19
2.0
20
85
4
55
22
15
0
62
1.32
223073--223183
35
3.2
35
87
2
152
32
3
36
27
1.74
227802--227834
16
2.1
16
88
5
50
18
30
3
48
1.63
228095--228143
26
1.9
26
87
4
73
6
8
16
69
1.33
228353--228414
26
2.4
26
86
0
88
32
4
29
33
1.78
229113--229152
20
1.9
22
85
10
57
22
22
12
42
1.87
229158--229302
62
2.4
62
91
1
229
24
26
20
27
1.99
231864--231922
19
3.1
19
92
0
91
79
10
10
0
0.93
233657--233716
30
2.0
31
83
3
77
26
8
10
55
1.61
234624--234675
21
2.6
21
90
6
81
32
15
5
46
1.70
235912--235962
20
2.6
20
87
3
59
33
17
5
43
1.73
236677--236759
35
2.3
38
81
12
102
75
3
15
4
1.10
238270--238304
17
2.1
17
100
0
70
37
11
28
22
1.89
239154--239213
30
2.0
31
83
3
77
26
8
10
55
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
240118--240165
20
2.5
20
90
10
73
35
12
6
45
1.67
245590--245630
19
2.2
18
87
12
57
65
2
12
19
1.36
247797--247860
34
1.9
33
96
3
119
32
23
28
15
1.95
250368--250415
19
2.4
20
86
13
64
64
0
10
25
1.25
250825--250876
19
2.6
21
84
6
72
46
3
13
36
1.62
251780--251839
30
2.0
31
83
3
77
55
10
8
26
1.61
255024--255075
19
2.6
21
90
6
81
46
5
13
34
1.67
255973--256032
30
2.0
31
83
3
77
55
10
10
25
1.64
258522--258582
27
2.3
27
83
16
74
11
13
4
70
1.31
262140--262177
15
2.6
14
88
12
58
78
10
10
0
0.95

Tables:   1   2

The End!