genome.fa.s8986.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008986.1 Hibiscus syriacus cultivar Beakdansim tig00112350_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  401385

Tables:   1   2   

This is table  2  of  2  ( 232 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212711--212893	72	2.7	69	82	13	193	51	16	2	29	1.58
214853--214891	19	2.0	20	90	5	62	51	20	15	12	1.76
214896--214992	33	2.9	33	77	9	97	15	19	18	46	1.84
216905--216958	20	2.7	20	82	0	72	38	24	18	18	1.93
217561--217614	20	2.7	20	94	0	90	20	18	20	40	1.91
217561--217632	20	3.5	20	88	1	81	20	20	20	37	1.95
218372--218693	158	2.0	158	98	0	617	33	5	15	45	1.70
223334--223368	2	17.5	2	100	0	70	51	0	0	48	1.00
224923--224978	29	1.9	29	100	0	112	23	33	17	25	1.96
227707--227788	2	44.0	2	70	13	59	48	0	0	51	1.00
227707--227787	24	3.4	24	76	10	85	48	0	0	51	1.00
227804--227840	12	3.0	12	92	4	56	10	16	54	18	1.71
228718--228745	2	14.0	2	100	0	56	50	0	0	50	1.00
235887--236012	66	1.9	65	81	1	153	9	25	26	38	1.87
247316--247407	31	2.8	32	80	9	107	50	6	1	42	1.35
250632--250797	60	2.8	59	81	7	167	35	21	3	40	1.68
251604--252010	206	2.0	203	95	1	724	26	12	19	41	1.87
274678--274857	60	3.0	59	78	8	177	36	19	5	39	1.74
275056--275167	40	2.8	40	82	5	127	33	20	17	28	1.96
275027--275203	80	2.2	81	83	8	209	32	22	16	28	1.96
274924--275453	42	12.9	41	73	10	325	30	21	17	30	1.96
276569--276608	21	1.9	21	94	0	71	35	12	17	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278627--278685	21	2.8	21	84	0	73	18	5	20	55	1.61
278813--278910	44	2.3	42	80	7	99	30	20	20	28	1.98
279074--279113	20	2.0	20	85	4	55	50	20	17	12	1.78
279250--279427	60	3.0	60	78	6	180	40	4	23	32	1.74
281108--281202	30	3.2	29	77	5	100	9	4	55	30	1.51
281135--281190	18	3.1	18	76	0	58	10	5	57	26	1.54
281212--281546	30	11.3	30	73	6	225	17	7	52	22	1.69
281271--281647	59	6.2	59	74	9	229	16	9	51	21	1.72
281223--281547	148	2.2	149	86	2	440	18	7	52	21	1.71
281498--281584	41	2.1	41	83	8	106	16	10	54	19	1.70
281272--281648	30	12.3	30	70	14	150	17	9	51	21	1.72
281469--281617	70	2.1	71	83	1	183	14	10	53	22	1.71
281746--281804	24	2.5	24	72	2	57	10	6	57	25	1.56
281770--281820	15	3.5	15	72	5	50	9	3	58	27	1.47
281803--281898	42	2.3	41	85	5	122	9	7	57	26	1.56
281893--281996	29	3.6	29	92	5	174	12	3	58	25	1.51
284221--284267	24	2.0	24	82	0	58	4	4	61	29	1.34
284257--284299	15	2.9	15	78	0	50	11	4	58	25	1.52
284301--284383	30	2.8	30	87	3	114	9	6	56	27	1.55
284440--284497	28	2.0	30	93	6	102	27	6	50	15	1.70
284417--284671	30	8.5	30	87	2	289	21	6	50	21	1.71
284658--284759	47	2.2	47	82	7	118	22	6	48	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284722--284857	30	4.7	30	68	15	79	23	7	49	19	1.73
286210--286335	44	2.9	44	87	1	173	31	31	14	22	1.93
293395--293477	42	2.0	42	100	0	166	31	21	10	36	1.88
295208--295940	366	2.0	366	97	2	1377	27	20	13	38	1.90
307062--307189	60	2.1	60	84	4	159	35	21	3	39	1.72
307148--307369	111	2.0	111	96	1	412	32	18	6	41	1.76
307473--307648	60	2.9	59	80	12	173	41	5	20	32	1.74
318517--318951	218	2.0	213	97	2	825	34	11	13	40	1.82
323198--323536	40	8.2	40	73	12	160	29	22	17	30	1.97
323160--323536	41	9.2	40	74	13	238	29	21	18	30	1.97
323132--323536	80	5.0	79	72	13	256	30	20	18	29	1.97
323602--323699	41	2.4	42	86	6	137	30	25	15	28	1.96
324812--324851	21	1.9	21	94	0	71	35	12	17	35	1.88
326896--326954	21	2.8	21	84	0	73	18	5	20	55	1.61
327082--327179	44	2.3	42	80	7	99	30	20	20	28	1.98
327344--327382	19	2.1	19	85	4	53	48	20	17	12	1.80
327519--327696	60	3.0	60	78	6	180	40	4	23	32	1.74
329404--329490	30	2.9	29	77	6	93	10	4	56	28	1.53
329423--329478	18	3.1	18	76	0	58	10	5	57	26	1.54
329789--329877	42	2.1	42	85	4	117	15	10	53	20	1.70
329759--329910	72	2.1	72	85	0	196	15	9	52	22	1.71
329500--329839	30	11.3	30	75	0	266	18	7	52	22	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329846--330039	30	6.5	30	77	0	127	21	8	50	19	1.73
329768--329952	102	1.8	102	82	2	228	17	11	50	20	1.77
329846--329970	60	2.1	60	83	3	153	19	10	52	18	1.74
329705--329971	132	2.0	132	80	0	300	19	9	50	20	1.75
329876--330048	90	1.9	90	80	4	197	21	7	50	19	1.72
330065--330116	15	3.5	15	78	0	59	9	3	59	26	1.46
330040--330093	24	2.2	24	80	0	63	11	7	57	24	1.58
330077--330248	48	3.4	47	76	12	155	9	5	59	24	1.51
330068--330132	30	2.2	30	88	0	94	12	6	60	21	1.54
330089--330295	54	3.8	54	77	11	176	10	5	59	24	1.51
330154--330192	18	2.2	18	85	0	51	7	10	64	17	1.48
330196--330330	30	4.5	30	93	0	216	14	4	58	22	1.54
330209--330293	15	5.7	15	70	0	71	12	3	62	21	1.45
332707--332756	18	2.8	18	81	0	64	8	6	60	26	1.48
332772--332853	30	2.7	30	92	0	137	8	7	56	28	1.56
332890--333164	30	9.2	30	88	0	300	21	6	49	22	1.72
332921--333193	60	4.6	60	83	0	177	23	6	48	21	1.73
332873--333164	90	3.3	90	82	0	334	22	6	49	21	1.72
333132--333235	48	2.2	48	85	3	138	23	6	48	22	1.74
333102--333259	78	2.0	78	82	2	192	24	7	46	21	1.77
333238--333337	30	3.3	29	69	8	76	27	4	47	22	1.69
335058--335194	44	3.1	44	91	0	202	32	32	14	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360580--360621	22	1.9	22	85	0	57	42	23	2	30	1.67
362523--362588	30	2.2	30	97	2	123	40	12	6	40	1.67
364983--365065	20	4.1	20	74	10	69	15	26	34	22	1.94
371114--371179	30	2.2	30	97	2	123	40	12	6	40	1.67
371453--371515	21	2.9	21	88	4	90	52	15	15	15	1.75
371453--371518	23	3.0	23	88	4	100	51	15	15	18	1.77
371810--371928	44	2.7	44	87	6	177	52	2	5	38	1.39
372616--372661	24	1.9	24	95	0	83	39	17	0	43	1.49
376305--376349	21	2.1	21	83	0	54	26	51	22	0	1.49
378465--378495	16	1.9	16	93	0	53	64	6	0	29	1.18
381941--382011	34	2.2	32	87	5	97	22	29	14	33	1.93
382294--382335	21	2.0	21	90	0	66	26	26	21	26	1.99
382533--382592	29	2.0	31	90	6	97	41	16	6	35	1.75
383863--383912	20	2.5	20	100	0	100	32	10	4	54	1.52
383863--383934	20	3.7	19	89	9	69	33	13	4	48	1.62
385407--385477	34	2.1	34	84	5	92	21	29	14	35	1.92
385756--385797	21	2.0	21	95	0	75	26	28	21	23	1.99
385903--385949	19	2.5	19	85	0	58	38	14	8	38	1.77
389097--389135	13	2.9	13	81	7	51	79	0	0	20	0.73
390417--390492	28	2.7	28	87	2	107	30	14	11	43	1.81
395153--395234	29	2.8	29	92	1	128	32	14	10	41	1.81
396800--396881	29	2.9	29	83	1	94	18	40	28	13	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397025--397081	29	2.0	29	89	6	89	10	31	35	22	1.88
400296--400355	25	2.3	26	85	2	77	38	1	1	58	1.18

Tables:   1   2

The End!