genome.fa.s8989.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008989.1 Hibiscus syriacus cultivar Beakdansim tig00112354_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  534435

Tables:   1   2   

This is table  2  of  2  ( 239 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145760--147688	725	2.7	725	96	0	3509	27	16	13	41	1.86
148785--148847	2	31.5	2	100	0	126	49	0	0	50	1.00
149461--149581	36	3.4	35	77	8	120	43	18	14	23	1.86
149478--149594	24	5.0	24	72	5	69	45	16	13	24	1.83
149536--149586	12	4.2	12	76	0	57	39	15	17	27	1.90
151514--151593	23	3.4	23	81	6	90	18	22	26	32	1.97
151514--151574	24	2.6	24	86	2	88	21	22	26	29	1.99
158392--158504	54	2.1	54	89	0	172	31	27	14	26	1.94
162985--163051	30	2.2	30	100	0	134	32	20	16	29	1.95
169705--170052	130	2.7	131	84	3	382	41	16	9	33	1.80
173553--173645	31	3.0	30	72	17	91	43	7	8	40	1.64
174341--174394	23	2.4	22	78	3	63	44	14	29	11	1.80
176471--176497	7	3.9	7	100	0	54	0	11	59	29	1.32
183431--183505	31	2.4	31	84	6	107	33	25	21	20	1.97
207061--207195	67	2.0	67	95	0	243	27	15	14	42	1.85
214487--214543	28	2.0	29	83	10	73	43	12	0	43	1.41
216285--216318	15	2.4	14	85	9	50	44	8	2	44	1.50
218588--218702	60	1.9	60	85	3	160	20	17	22	39	1.93
224285--224322	16	2.3	17	86	4	51	31	5	28	34	1.80
241830--241874	23	2.0	23	86	0	63	26	26	26	20	1.99
242494--242531	20	1.9	20	88	0	58	10	31	34	23	1.89
249283--249320	20	1.9	20	88	0	58	10	31	34	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250592--250618	13	2.1	13	100	0	54	37	14	25	22	1.93
251053--251079	14	1.9	14	100	0	54	33	14	14	37	1.88
251856--251899	20	2.2	20	88	8	63	38	25	0	36	1.56
252032--252108	2	38.5	2	100	0	154	49	0	0	50	1.00
257149--257204	19	3.0	19	71	10	53	53	1	1	42	1.21
258900--259295	197	2.0	199	98	1	778	34	17	21	26	1.96
263232--263344	10	11.8	9	72	12	73	17	25	27	29	1.98
263248--263344	19	5.1	19	74	10	63	16	25	27	29	1.97
263232--263306	29	2.5	30	87	8	109	17	26	25	30	1.97
263232--263334	29	3.5	28	80	10	82	18	26	26	29	1.98
263233--263350	9	12.3	9	72	12	74	17	26	27	28	1.98
263347--263389	22	2.0	22	100	0	86	18	48	23	9	1.76
287059--287105	18	2.6	18	93	0	76	0	21	34	44	1.52
287061--287104	12	3.7	12	82	11	54	0	22	36	40	1.54
292559--292589	5	6.2	5	96	0	53	0	22	22	54	1.44
296415--296448	6	6.0	6	93	6	54	35	0	64	0	0.94
302637--302703	31	2.3	30	87	7	93	52	2	5	38	1.41
303771--303819	21	2.3	22	89	6	75	53	0	4	42	1.20
304117--304144	2	14.0	2	100	0	56	50	0	0	50	1.00
308282--308372	44	2.0	46	89	4	141	15	43	21	18	1.87
308314--308351	18	2.1	18	100	0	76	15	50	23	10	1.75
308333--308379	8	6.5	8	77	22	59	14	38	25	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308284--308372	13	6.3	13	79	14	79	15	42	22	19	1.88
308349--308380	7	4.4	7	92	7	55	12	34	28	25	1.92
308333--308379	15	3.3	15	91	5	71	14	38	25	21	1.92
310910--311009	24	4.2	24	72	8	78	24	13	16	47	1.81
313143--313233	44	2.0	46	89	4	141	15	43	21	18	1.87
313175--313212	18	2.1	18	100	0	76	15	50	23	10	1.75
313194--313240	8	6.5	8	77	22	59	14	38	25	21	1.92
313145--313233	13	6.3	13	79	14	79	15	42	22	19	1.88
313210--313241	7	4.4	7	92	7	55	12	34	28	25	1.92
313194--313240	15	3.3	15	91	5	71	14	38	25	21	1.92
315770--315869	24	4.2	24	72	8	78	24	13	16	47	1.81
320131--320187	21	2.7	21	94	2	96	40	14	26	19	1.89
321146--321277	60	2.2	58	78	10	142	31	19	6	43	1.75
321206--321353	76	1.9	76	81	8	176	31	18	6	42	1.77
321146--321418	136	2.0	136	92	0	456	31	19	6	42	1.77
321287--321413	60	2.1	59	80	8	132	33	14	7	43	1.75
321605--321670	32	2.1	32	88	5	98	19	27	7	45	1.77
321824--321982	60	2.6	61	79	4	178	41	3	19	35	1.70
336112--336154	24	1.9	23	86	13	63	39	11	11	37	1.78
336177--336236	24	2.5	24	100	0	120	38	13	10	38	1.78
347955--347980	7	3.7	7	100	0	52	26	0	0	73	0.84
351204--351250	18	2.6	18	93	3	76	36	19	34	10	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356620--356663	22	2.0	22	82	8	54	59	0	0	40	0.98
358449--358481	10	3.4	10	87	4	50	90	9	0	0	0.44
367410--368330	454	2.0	459	94	3	1602	29	22	20	27	1.98
369369--369465	20	4.8	20	87	3	142	42	19	20	17	1.90
369352--369438	40	2.2	40	81	8	97	41	24	18	16	1.90
369459--369502	20	2.2	20	87	0	61	34	18	25	22	1.96
369368--369496	40	3.2	40	81	2	134	41	19	20	18	1.91
369495--369547	20	2.7	20	90	0	88	28	13	22	35	1.92
369534--369656	57	2.2	57	87	0	183	30	15	20	34	1.93
369631--369676	20	2.3	20	100	0	92	32	15	21	30	1.94
369574--369733	77	2.1	77	90	2	250	29	14	20	35	1.92
369740--369780	20	2.0	20	90	0	64	31	9	29	29	1.89
372731--372765	17	2.2	15	90	10	52	51	0	0	48	1.00
378161--378231	29	2.4	29	86	9	90	23	5	11	59	1.53
384294--384381	38	2.3	39	94	4	160	44	9	22	23	1.81
406026--406082	25	2.2	26	84	6	71	38	5	1	54	1.33
406033--406082	27	1.9	26	88	8	75	40	4	2	54	1.31
414048--414180	22	6.5	21	67	17	64	38	25	17	18	1.92
414051--414171	60	2.0	61	95	1	217	39	23	17	19	1.92
414130--414198	20	3.4	20	76	4	75	39	24	18	17	1.92
414126--414227	41	2.5	41	93	0	177	38	24	17	19	1.93
414051--414198	60	2.4	59	87	7	183	39	24	18	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414490--414530	5	8.2	5	89	10	50	21	0	0	78	0.76
414937--414965	15	2.0	15	93	6	51	48	41	0	10	1.37
415303--415376	38	1.9	38	97	0	139	14	18	24	41	1.89
415628--415668	19	2.2	19	90	0	64	24	0	0	75	0.80
415628--415668	9	4.3	10	78	9	50	24	0	0	75	0.80
415633--415676	11	4.0	11	79	8	54	22	0	0	77	0.77
415632--415682	11	5.0	10	81	11	50	23	1	0	74	0.92
420510--420536	2	13.5	2	100	0	54	51	0	48	0	1.00
424520--424572	21	2.5	21	74	17	56	18	9	9	62	1.52
434309--434347	12	3.2	12	89	7	60	69	2	0	28	1.02
434314--434344	13	2.4	13	100	0	62	74	0	0	25	0.82
452858--452920	18	3.3	17	72	23	54	28	28	22	20	1.98
454404--454560	64	2.5	62	81	10	165	28	17	20	33	1.96
464089--464154	33	2.0	34	96	3	125	40	24	12	22	1.88
464277--464320	2	22.0	2	100	0	88	50	0	0	50	1.00
464897--464955	31	1.9	31	82	6	75	57	3	1	37	1.25
466059--466115	30	1.9	30	89	3	89	15	12	10	61	1.57
480888--480934	17	2.8	17	100	0	94	29	21	17	31	1.96
481655--481689	17	2.1	17	94	0	61	51	8	11	28	1.67
481716--481760	20	2.2	20	92	0	72	28	24	11	35	1.90
494238--494282	21	2.1	21	87	0	63	31	28	24	15	1.96
495085--495209	31	4.0	31	92	2	198	20	20	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498368--498412	21	2.1	21	87	0	63	31	28	24	15	1.96
499212--499336	31	4.0	31	90	2	189	20	20	22	36	1.95
511053--511082	15	2.0	15	93	0	51	53	3	6	36	1.44
512127--512157	2	15.5	2	100	0	62	48	0	0	51	1.00
513337--513369	16	2.1	16	94	0	57	33	6	27	33	1.81
529533--529592	24	2.5	23	81	7	75	56	0	5	38	1.21
529534--529592	23	2.5	24	83	5	75	55	0	5	38	1.22
529711--529756	2	23.0	2	100	0	92	50	0	0	50	1.00
529868--529950	39	2.2	38	80	10	89	45	1	18	34	1.57

Tables:   1   2

The End!