genome.fa.s8989.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008989.1 Hibiscus syriacus cultivar Beakdansim tig00112354_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  534435

Tables:   1   2   

This is table  1  of  2  ( 239 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150--192	21	2.0	22	90	4	70	46	4	0	48	1.22
2322--2385	24	2.6	25	76	11	62	56	0	0	43	0.99
2530--2584	26	2.1	26	86	0	74	27	3	20	49	1.65
2530--2593	26	2.5	26	80	10	69	28	3	20	48	1.64
5153--5186	18	1.9	17	88	5	50	55	5	5	32	1.48
5906--5950	23	1.9	24	82	13	58	28	2	4	64	1.25
6120--6173	23	2.3	23	80	0	63	31	16	11	40	1.84
6245--6286	23	1.9	23	85	9	61	35	19	11	33	1.88
9081--9123	21	2.0	21	81	0	50	27	30	25	16	1.97
10247--10335	30	2.9	30	89	1	124	24	15	24	34	1.95
16009--16428	211	2.0	211	99	0	822	22	17	18	41	1.90
21518--21561	21	2.0	23	86	8	65	47	4	0	47	1.22
21729--21757	14	2.1	14	100	0	58	55	6	0	37	1.27
23702--23777	34	2.3	33	84	8	93	53	1	1	43	1.17
23773--23823	26	2.0	26	96	0	93	29	3	15	50	1.62
23858--23912	26	2.1	26	86	0	74	27	3	20	49	1.65
24353--24380	3	9.3	3	100	0	56	32	0	0	67	0.91
31671--31739	21	3.3	21	83	4	77	50	2	0	46	1.16
31670--31730	21	3.0	21	85	2	88	50	3	0	45	1.17
31733--31793	30	2.1	29	84	3	77	54	1	3	40	1.27
31791--31885	25	3.8	26	72	17	92	44	3	0	52	1.17
31796--31898	34	2.9	34	79	12	93	43	2	0	53	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32138--32166	13	2.1	14	93	6	51	48	0	0	51	1.00
32162--32268	49	2.2	47	83	5	133	43	1	1	52	1.22
31794--32575	361	2.2	359	88	5	1132	37	8	8	45	1.65
32503--32527	13	1.9	13	100	0	50	48	0	4	48	1.20
32588--32630	21	2.0	21	95	0	77	41	2	0	55	1.12
35072--35115	21	2.0	23	86	8	65	47	4	0	47	1.22
37240--37304	13	5.3	13	71	17	59	58	0	1	40	1.07
37366--37416	26	2.0	26	96	0	93	29	3	15	50	1.62
37451--37505	26	2.1	26	86	0	74	27	3	20	49	1.65
37451--37514	26	2.5	26	80	10	69	28	3	20	48	1.64
37945--37969	3	8.3	3	100	0	50	32	0	0	68	0.90
48461--48508	14	3.7	14	73	21	59	10	29	39	20	1.86
48461--48511	24	2.1	24	96	0	93	11	27	39	21	1.88
48551--48608	29	2.0	29	89	0	89	22	27	36	13	1.92
49332--49555	104	2.1	104	93	2	378	27	13	23	35	1.93
51577--51608	15	2.1	15	94	0	55	31	6	3	59	1.38
64642--64675	18	1.9	17	88	5	50	55	5	5	32	1.48
65027--65139	60	1.9	60	83	0	145	41	16	10	30	1.83
65550--65581	8	4.0	8	95	0	55	84	0	0	15	0.63
65546--65583	9	4.4	9	87	9	53	81	0	0	18	0.69
65546--65584	17	2.3	17	90	0	60	82	0	0	17	0.68
65535--65579	22	2.0	22	82	4	54	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68953--68984	12	2.7	12	100	0	64	9	34	31	25	1.87
74100--74145	22	2.1	22	88	4	67	28	0	8	63	1.24
79965--80026	30	2.1	30	87	0	88	33	11	33	20	1.89
80094--80137	2	22.5	2	95	4	81	50	0	0	50	1.00
80095--80142	8	6.4	7	95	4	53	52	0	0	47	1.00
80309--80345	19	1.9	19	94	0	65	27	10	29	32	1.90
81504--81660	69	2.3	69	90	0	242	33	1	36	28	1.65
81925--81983	29	2.0	29	100	0	118	49	13	13	23	1.78
86608--86666	29	2.0	29	100	0	118	49	13	13	23	1.78
86711--87070	69	5.2	69	87	0	522	33	1	37	27	1.66
90176--90204	2	14.5	2	100	0	58	51	0	48	0	1.00
91732--91779	23	2.1	23	84	0	60	35	10	18	35	1.85
92195--92267	23	3.2	23	80	0	83	42	20	4	32	1.71
91846--92899	430	2.5	429	97	0	2009	38	11	7	41	1.70
92635--92697	23	2.7	23	92	0	99	38	20	4	36	1.74
93117--93202	39	2.2	39	93	0	145	18	13	18	48	1.80
93459--93495	18	2.1	18	89	0	56	51	10	5	32	1.60
93918--94066	23	6.5	23	89	3	219	40	19	5	34	1.74
93918--94066	46	3.2	46	96	0	271	40	19	5	34	1.74
94352--94417	25	2.6	25	80	0	87	42	13	9	34	1.76
95447--95939	183	2.7	183	96	0	907	33	17	15	33	1.91
96975--97947	199	4.9	199	97	0	1786	31	16	15	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96975--97947	397	2.4	398	97	0	1795	31	16	15	37	1.90
98066--98114	19	2.6	19	93	0	80	57	10	2	30	1.43
99910--99970	32	1.9	32	89	0	95	22	47	0	29	1.52
100004--100068	21	3.1	21	81	0	76	15	30	15	38	1.88
102294--102336	20	2.3	18	85	14	61	20	16	11	51	1.75
102299--102345	20	2.4	19	82	10	67	19	17	10	53	1.72
102468--102513	20	2.3	20	89	10	76	17	17	10	54	1.70
103779--103808	15	2.0	15	93	0	51	63	0	0	36	0.95
103734--103813	42	1.9	41	89	2	124	51	3	2	42	1.33
107523--107623	31	3.3	31	98	0	193	33	10	10	44	1.75
110320--110595	41	7.0	42	75	11	208	23	24	17	34	1.96
110320--110375	20	2.7	21	77	5	60	23	25	16	35	1.94
110267--110488	113	2.0	113	84	5	297	23	26	16	33	1.96
110419--110553	20	6.7	20	83	3	171	16	24	20	39	1.92
110419--110621	20	9.9	20	80	3	163	20	24	18	36	1.94
110506--110633	62	2.1	62	93	0	220	27	23	15	33	1.95
110413--110615	82	2.5	82	82	3	264	21	24	17	36	1.94
110566--110644	41	1.9	41	92	0	131	27	22	13	35	1.93
111626--111668	6	7.5	6	89	2	54	2	16	53	27	1.55
111760--111855	21	4.6	21	82	2	122	32	18	23	25	1.97
113714--113771	29	2.0	29	100	0	116	37	17	0	44	1.49
117310--117362	20	2.7	20	85	5	72	32	20	28	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117397--117439	22	1.9	23	90	4	70	20	20	32	25	1.97
117383--117481	21	4.8	20	82	13	119	21	19	36	23	1.95
117549--117614	29	2.2	28	78	17	71	48	16	7	27	1.73
117561--117619	29	2.0	30	90	6	93	44	15	6	33	1.73
120802--120967	21	8.0	22	73	11	138	25	26	26	21	2.00
120811--120928	20	5.8	20	74	11	114	26	26	28	18	1.98
120802--120945	41	3.5	41	95	1	254	25	26	27	20	1.99
120829--120967	62	2.2	61	80	8	156	25	25	25	22	2.00
121124--121183	29	2.0	31	90	6	97	43	15	6	35	1.72
126293--126612	36	8.9	36	77	13	318	26	19	12	41	1.87
126476--126596	42	3.0	42	82	14	173	23	20	13	42	1.87
126539--126603	21	3.4	21	64	24	61	26	21	10	41	1.86
126442--126596	78	2.0	79	88	1	231	23	20	14	41	1.88
127164--127220	3	20.7	3	77	22	63	33	0	0	66	0.92
127165--127211	5	9.2	5	90	9	69	36	0	0	63	0.94
128706--128730	4	6.2	4	100	0	50	24	0	0	76	0.80
128831--128859	12	2.3	13	94	5	51	31	0	0	68	0.89
130525--130564	16	2.6	15	92	4	62	0	20	0	80	0.72
131440--131702	95	2.7	96	86	3	341	34	17	15	31	1.92
132962--133205	124	2.0	124	88	1	364	31	24	19	24	1.98
133291--133716	36	12.1	36	73	14	345	26	18	12	42	1.86
133291--133544	138	1.8	138	85	1	357	27	18	11	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133296--133716	174	2.4	173	91	2	675	26	18	13	42	1.86
133613--133716	37	2.8	37	88	0	154	22	20	17	40	1.91
133657--133784	67	1.9	67	90	3	204	27	21	14	37	1.91
133788--133852	32	2.0	32	93	0	112	46	12	9	32	1.73
134187--134232	3	16.3	3	79	20	55	30	0	0	69	0.89
135526--135552	11	2.5	11	100	0	54	25	18	11	44	1.83
135673--135720	23	2.2	20	78	10	51	25	14	4	56	1.56
138475--138557	29	2.8	29	92	1	139	43	9	14	32	1.78
143246--143328	29	2.8	29	92	1	139	43	9	14	32	1.78
145760--147688	182	10.6	182	95	1	3401	27	16	13	41	1.86

Tables:   1   2