genome.fa.s8990.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008990.1 Hibiscus syriacus cultivar Beakdansim tig00112357_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  317955

Tables:   1   2   

This is table  2  of  2  ( 173 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207109--207165	14	3.7	14	77	20	60	10	21	22	45	1.82
207092--207184	33	2.8	33	95	0	168	10	20	21	47	1.80
209285--209383	19	5.5	19	82	15	138	44	17	23	15	1.86
209285--209400	51	2.2	53	93	3	200	43	17	25	14	1.87
209390--209538	19	8.6	19	73	21	139	14	23	18	43	1.87
209414--209468	14	3.6	14	73	21	56	10	23	20	45	1.82
209396--209487	33	2.8	33	98	0	175	14	21	18	45	1.84
209428--209538	52	2.1	52	98	1	159	13	23	18	45	1.84
209597--209694	19	5.4	19	84	13	143	45	17	22	14	1.84
209597--209713	53	2.2	53	98	1	227	44	17	23	13	1.85
212028--212052	12	2.1	12	100	0	50	0	28	0	72	0.86
212227--212273	24	2.0	24	87	8	69	38	21	14	25	1.92
212955--213204	20	12.5	20	86	1	259	19	18	24	38	1.93
213191--213273	21	4.0	21	73	6	78	25	16	24	33	1.96
213171--213269	42	2.4	43	77	11	100	21	18	23	37	1.94
215448--215489	21	2.0	21	85	0	57	2	52	0	45	1.13
216263--216291	2	14.5	2	100	0	58	48	0	0	51	1.00
218754--218882	41	3.1	41	90	0	213	24	16	23	35	1.95
220794--220824	4	7.8	4	100	0	62	77	22	0	0	0.77
226310--226360	21	2.4	22	83	9	61	62	3	3	29	1.31
232852--232903	24	2.2	24	89	0	77	17	21	19	42	1.89
245321--245363	22	2.0	21	86	9	59	20	0	37	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245312--245365	7	7.6	7	82	12	56	20	0	33	46	1.51
245820--245852	3	10.7	3	93	6	57	3	0	30	66	1.06
248068--248121	21	2.5	21	77	14	56	48	7	5	38	1.55
248133--248194	29	2.1	31	84	6	83	40	8	6	45	1.59
248335--248391	29	1.9	29	85	3	78	52	10	10	26	1.68
252572--252604	12	2.8	12	100	0	66	36	0	15	48	1.45
252878--252909	4	8.0	4	100	0	64	25	0	0	75	0.81
254627--254694	33	2.0	34	94	2	120	42	35	8	13	1.75
255976--256040	15	4.5	14	72	14	51	41	1	1	55	1.18
258611--258752	59	2.4	58	79	11	153	34	16	19	29	1.94
260909--261002	31	3.1	31	70	6	93	46	5	27	20	1.72
260913--261008	30	3.2	30	70	7	79	48	5	26	19	1.69
269041--269087	22	2.1	23	88	4	69	38	25	12	23	1.90
272965--272990	9	2.9	9	100	0	52	46	23	7	23	1.78
274575--274601	7	3.9	7	100	0	54	74	0	0	25	0.83
278497--278523	2	13.5	2	100	0	54	51	0	0	48	1.00
279891--279948	2	29.0	2	100	0	116	50	0	0	50	1.00
280133--280165	2	16.5	2	100	0	66	48	0	0	51	1.00
283175--283215	17	2.6	16	88	11	59	29	0	0	70	0.87
284530--284672	44	3.3	44	73	8	132	44	0	2	52	1.20
284615--284672	22	2.6	25	76	23	74	48	0	0	51	1.00
287799--287839	20	2.0	20	100	0	82	39	19	36	4	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289407--289532	62	2.0	62	96	0	234	38	4	18	38	1.72
295680--295705	13	2.0	13	100	0	52	30	0	7	61	1.24
297050--297212	60	2.7	59	81	3	175	34	19	6	39	1.77
298420--298584	60	2.7	61	78	10	187	34	18	4	42	1.70
298606--298732	62	2.0	62	90	0	200	38	6	11	43	1.67
299052--299088	2	18.5	2	100	0	74	0	48	0	51	1.00
300753--300777	5	5.0	5	100	0	50	80	0	0	20	0.72
308945--309295	180	1.9	181	87	2	508	21	30	17	30	1.96
310346--310418	35	2.1	35	86	0	101	23	27	20	28	1.99

Tables:   1   2

The End!