genome.fa.s8994.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008994.1 Hibiscus syriacus cultivar Beakdansim tig00112370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  399360

Tables:   1   2   

This is table  2  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245250--245284	12	2.9	12	95	0	61	28	51	11	8	1.67
252078--252180	9	10.8	9	75	12	71	17	25	27	30	1.97
252078--252145	10	6.9	10	75	8	50	19	26	23	30	1.98
252078--252116	21	1.9	21	89	5	62	17	25	23	33	1.96
252079--252196	19	6.2	18	77	8	92	16	25	27	30	1.97
252079--252180	29	3.5	28	85	5	123	16	25	27	30	1.97
252101--252196	28	3.4	28	85	4	129	15	25	29	30	1.96
252193--252267	5	13.8	5	73	15	60	18	49	22	9	1.76
252210--252274	22	3.0	22	95	0	121	18	47	23	10	1.79
252191--252262	17	3.9	17	83	16	99	18	47	22	12	1.81
252264--252294	7	4.4	7	95	0	53	19	29	25	25	1.99
262080--262189	56	1.9	57	87	7	161	20	19	25	34	1.96
262980--263058	41	1.9	41	97	0	149	30	15	5	49	1.66
264547--264647	36	2.8	36	80	5	123	10	28	10	49	1.72
265856--265970	58	2.0	58	86	3	160	29	21	15	33	1.95
265734--266043	60	5.2	59	78	10	269	30	19	18	31	1.96
266019--266088	29	2.4	29	78	4	79	42	20	10	27	1.83
270942--270974	12	2.5	13	85	14	50	42	0	0	57	0.98
271116--271159	23	2.0	23	90	4	72	43	6	11	38	1.67
271523--271555	2	16.5	2	100	0	66	51	0	0	48	1.00
272028--272067	21	1.9	21	85	10	55	22	37	25	15	1.93
277136--277185	19	2.6	20	78	9	59	36	2	0	62	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277146--277195	17	2.8	17	85	8	64	36	2	0	62	1.07
281146--281213	31	2.2	31	86	0	91	32	11	8	47	1.71
281328--281376	26	1.9	26	91	4	82	55	0	2	42	1.11
281339--281431	26	3.6	27	80	10	95	52	0	4	43	1.21
281377--281435	22	2.5	22	89	8	82	52	0	5	42	1.23
281359--281433	27	3.0	25	83	11	84	52	0	4	44	1.20
281375--281443	24	2.8	25	79	16	83	53	0	4	42	1.20
281490--281521	15	2.1	16	94	5	57	37	3	0	59	1.13
281581--281650	35	2.0	36	82	2	88	58	2	4	34	1.32
284594--284623	2	15.0	2	100	0	60	50	0	0	50	1.00
288715--289273	111	5.0	111	92	1	888	30	16	22	30	1.96
288710--289273	220	2.5	222	91	0	916	30	16	22	30	1.96
290463--290518	12	4.8	12	82	8	71	8	16	0	75	1.05
290443--290518	22	3.4	21	78	7	71	9	15	0	75	1.05
303703--303825	60	2.1	59	85	8	162	36	8	17	37	1.81
304034--304059	2	13.0	2	100	0	52	50	0	0	50	1.00
310585--310657	20	3.6	20	81	3	101	21	38	24	15	1.92
310587--310681	43	2.3	42	90	3	147	20	38	25	15	1.92
311954--312001	19	2.5	20	82	3	62	52	6	12	29	1.63
313416--313456	21	2.0	21	95	0	73	17	39	29	14	1.89
316372--316423	20	2.6	20	93	0	86	50	19	19	11	1.77
316434--316490	20	2.8	20	100	0	114	38	21	24	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316353--316489	62	2.3	58	82	11	152	43	21	20	14	1.88
322591--322906	175	1.8	169	95	4	578	37	12	12	37	1.82
322964--323039	40	1.9	40	86	5	109	36	21	15	26	1.93
323210--323262	27	2.0	27	88	0	79	47	1	1	49	1.23
324366--324451	16	5.4	16	66	13	61	36	1	3	59	1.22
324368--324477	32	3.4	33	75	19	133	34	1	5	58	1.32
324366--324498	64	2.1	64	100	0	266	36	1	4	57	1.28
328672--328916	43	5.7	43	83	4	282	32	17	22	26	1.97
328676--328919	128	1.9	128	85	1	337	31	18	22	26	1.97
328951--328995	15	3.3	15	73	23	53	35	11	6	46	1.66
331344--331417	38	2.0	37	84	5	96	47	4	1	47	1.29
336298--336343	21	2.2	21	84	7	58	32	15	15	36	1.88
337765--337826	33	1.9	32	87	9	90	48	1	1	48	1.21
338061--338146	43	2.0	43	93	0	145	40	23	18	17	1.91
338956--338980	13	1.9	13	100	0	50	44	24	24	8	1.80
343149--343182	17	1.9	18	88	5	52	67	2	2	26	1.19
343819--343944	62	2.0	64	89	3	193	41	15	7	35	1.76
345347--345392	24	1.9	24	86	0	65	34	0	2	63	1.07
345832--345907	26	2.9	26	88	0	116	34	21	11	32	1.89
361864--361933	34	2.1	34	91	0	113	48	20	5	25	1.71
366356--366423	30	2.2	31	84	7	86	57	2	0	39	1.14
388773--388825	22	2.4	22	93	0	88	39	9	5	45	1.60

Tables:   1   2

The End!