genome.fa.s8999.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008999.1 Hibiscus syriacus cultivar Beakdansim tig00112380_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  605736

Tables:   1   2   3   

This is table  3  of  3  ( 290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534850--534880	9	3.4	9	100	0	62	19	25	35	19	1.95
537141--537180	19	2.1	19	100	0	80	25	10	10	55	1.64
539596--539880	102	2.8	102	84	1	338	28	15	16	38	1.90
539755--539882	25	5.0	25	66	3	76	25	17	18	38	1.92
539779--539862	26	3.3	26	72	3	80	27	19	17	35	1.94
539596--539882	51	5.6	51	83	0	277	28	15	17	39	1.90
539596--539880	153	1.9	152	81	2	347	28	15	16	38	1.90
539847--540171	51	6.4	51	77	6	248	30	6	20	42	1.77
539883--540130	101	2.4	102	80	2	284	30	6	21	41	1.78
540084--540121	20	1.9	19	89	5	58	34	0	21	44	1.52
540987--541071	2	43.0	2	77	11	86	50	1	3	44	1.26
543999--544039	22	1.9	21	90	5	64	24	0	4	70	1.06
550835--550919	36	2.3	38	78	15	97	45	0	2	51	1.13
551333--551397	15	4.5	15	70	18	66	53	3	0	43	1.16
551571--551625	21	2.6	21	85	5	76	18	25	18	38	1.93
551647--551778	20	6.5	20	74	11	90	34	24	17	24	1.96
551641--551778	41	3.4	41	79	9	165	35	23	16	24	1.95
552112--552167	27	2.1	27	100	0	112	33	3	21	41	1.70
552294--552336	20	2.2	20	91	0	68	9	18	20	51	1.74
552473--552527	25	2.2	24	78	15	58	20	9	18	52	1.71
553634--553681	18	2.7	18	90	0	78	27	43	12	16	1.84
554216--554261	20	2.3	20	88	0	65	36	26	21	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554274--554329	14	3.6	14	71	28	51	42	25	21	10	1.85
554255--554346	33	2.8	33	96	0	166	45	20	20	13	1.84
554255--554351	19	5.6	19	67	30	74	44	20	21	13	1.86
554417--554454	20	1.9	20	94	0	67	21	13	28	36	1.91
554794--554872	42	1.9	41	87	7	115	24	40	15	20	1.90
556451--556503	14	3.4	14	75	22	52	45	20	22	11	1.83
556535--556623	20	4.4	20	97	0	169	14	21	25	38	1.92
556516--556623	40	2.8	37	90	8	132	12	20	25	41	1.88
556970--557048	20	4.0	20	96	0	140	29	20	27	22	1.98
557732--557778	24	2.0	24	86	0	67	23	19	19	38	1.93
557960--557984	12	2.1	12	100	0	50	72	0	28	0	0.86
560232--560304	20	3.6	20	70	17	69	32	24	19	23	1.97
560278--560427	19	8.6	19	67	21	87	44	19	23	12	1.85
560298--560424	33	3.8	33	92	0	209	46	18	22	12	1.82
560424--560477	19	3.1	19	70	29	57	9	18	25	46	1.79
560424--560513	33	2.7	33	87	3	128	12	20	22	45	1.83
560455--560513	19	3.4	18	68	22	54	13	22	18	45	1.84
560620--560656	14	2.6	14	91	0	65	45	21	0	32	1.52
562005--562127	42	2.9	41	79	7	113	21	19	36	21	1.95
562214--562430	20	10.6	20	70	10	109	26	19	17	36	1.94
562297--562472	21	8.5	21	69	12	62	28	18	21	30	1.97
562656--562695	20	2.0	21	90	5	64	37	0	2	60	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562660--562713	28	1.9	28	85	7	74	37	0	1	61	1.07
566216--566276	22	2.8	22	82	12	72	44	14	1	39	1.55
584479--584537	20	2.8	21	84	10	75	18	25	35	20	1.95
584455--584537	21	3.9	21	76	9	87	16	25	36	21	1.94
588334--588373	21	1.9	21	85	10	55	35	10	2	52	1.48
596459--596488	15	2.0	15	100	0	60	40	6	6	46	1.56

Tables:   1   2   3

The End!