genome.fa.s900.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000900.1 Hibiscus syriacus cultivar Beakdansim tig00001767_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82491

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1985--2009	13	1.9	13	100	0	50	84	8	8	0	0.79
2227--2271	22	2.0	22	86	0	63	24	13	40	22	1.90
2405--2445	20	2.0	20	100	0	82	17	19	24	39	1.92
2413--2485	20	3.7	20	76	10	78	23	16	27	32	1.96
7241--7306	33	2.0	33	100	0	132	45	0	9	45	1.35
11998--12030	15	2.2	15	100	0	66	57	0	12	30	1.35
12834--12860	2	13.5	2	100	0	54	0	48	0	51	1.00
14423--14453	6	5.2	6	92	0	53	35	45	16	3	1.63
17984--18058	25	3.0	25	78	7	82	30	21	10	37	1.87
29101--29176	36	2.1	36	100	0	152	42	15	10	31	1.81
30773--30803	15	2.1	15	100	0	62	35	25	12	25	1.92
33633--33662	15	2.0	15	93	0	51	16	46	23	13	1.82
35013--35049	19	1.9	19	94	0	65	32	27	5	35	1.79
35032--35105	25	3.0	25	91	0	103	25	24	8	41	1.82
40630--40667	20	1.9	20	94	0	67	50	18	21	10	1.76
42340--42389	21	2.4	21	79	0	55	18	10	34	38	1.84
42799--42915	21	5.6	20	73	18	96	23	35	18	23	1.96
42797--42915	42	2.8	40	85	9	157	22	35	18	23	1.96
46480--46513	12	2.8	12	90	0	50	14	0	29	55	1.40
47110--47140	16	1.9	16	93	0	53	67	0	3	29	1.06
47282--47391	20	5.6	19	71	14	71	37	11	21	29	1.89
47313--47391	40	2.0	40	89	0	122	36	12	21	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47468--47509	21	2.0	20	90	4	66	35	14	21	28	1.92
47410--47594	101	1.8	100	80	9	223	32	11	24	30	1.91
47547--47594	20	2.4	20	79	6	53	22	10	31	35	1.88
55530--56728	399	3.0	397	93	3	2081	35	10	9	45	1.70
57099--57214	10	11.1	10	72	19	78	74	3	4	18	1.13
58550--58589	11	3.3	12	86	10	55	75	5	0	20	0.99
58539--58589	6	8.3	6	80	8	50	76	5	0	17	0.98
58599--58711	35	3.1	36	81	11	115	49	5	0	45	1.24
58712--58761	25	2.0	25	88	7	75	40	10	8	42	1.68
58785--58990	74	2.9	69	76	13	168	45	9	1	43	1.48
58738--58991	38	7.0	36	77	14	186	44	9	2	43	1.51
58750--58953	107	1.9	106	83	8	263	43	9	2	44	1.49
59614--60866	84	14.9	84	78	6	1093	24	19	24	31	1.98
59719--60866	249	4.6	250	80	5	1131	25	18	24	31	1.98
62016--62227	95	2.4	87	78	16	236	31	20	18	29	1.96
62062--62240	95	1.9	95	90	2	288	30	18	18	32	1.95
64183--64213	14	2.2	14	94	0	53	45	22	9	22	1.81
64806--64850	22	2.0	23	82	4	56	75	0	8	15	1.03
64946--64982	7	5.3	7	93	0	65	83	0	0	16	0.64
66255--66317	15	4.3	15	78	17	69	76	1	0	22	0.88
66255--66325	10	6.3	11	74	22	58	74	2	0	22	0.94
66265--66306	9	4.4	10	76	11	52	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66255--66314	19	3.3	17	78	19	59	76	1	0	21	0.87
66267--66328	19	3.0	21	72	23	60	72	1	0	25	0.94
66255--66325	22	3.3	22	77	15	76	74	2	0	22	0.94
66272--66325	12	4.6	12	78	21	53	74	1	0	24	0.92
66342--66438	35	2.6	36	80	11	99	50	6	1	42	1.34
66439--66488	25	2.0	25	88	7	75	42	10	6	42	1.63
66465--66692	38	6.2	38	76	13	169	43	9	3	43	1.52
66501--66695	39	5.3	38	75	14	149	44	9	3	43	1.53
66529--66599	31	2.3	31	85	7	90	46	8	2	42	1.49
66499--66629	70	1.9	71	85	3	185	44	9	2	44	1.48
76929--77038	53	2.1	54	93	5	188	53	7	12	26	1.64

Tables:   1

The End!