Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009000.1 Hibiscus syriacus cultivar Beakdansim tig00112382_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1742898

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1003 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1633287--1633632
35
9.9
35
84
0
424
34
15
20
28
1.94
1633826--1633869
3
14.7
3
86
9
63
36
0
2
61
1.09
1633811--1633852
18
2.3
18
88
8
59
42
0
2
54
1.13
1633811--1633869
15
3.7
16
84
11
68
40
0
1
57
1.09
1635073--1635116
23
2.0
23
86
4
63
38
6
0
54
1.27
1637417--1637451
6
5.8
6
100
0
70
0
0
14
85
0.59
1640252--1640298
24
2.0
24
87
8
69
57
10
2
29
1.44
1650384--1650430
24
2.0
24
83
8
60
57
12
2
27
1.47
1653329--1653358
15
2.0
15
100
0
60
13
26
33
26
1.93
1657053--1657112
2
30.0
2
100
0
120
50
0
0
50
1.00
1657093--1657182
43
2.1
43
95
0
162
37
6
7
47
1.59
1669144--1669222
38
2.1
38
85
4
106
69
3
1
25
1.12
1674145--1674876
68
10.8
68
88
1
1027
30
14
23
31
1.94
1674826--1675465
81
7.9
79
82
4
692
34
10
23
30
1.89
1674826--1675471
243
2.7
243
85
2
852
35
10
23
30
1.89
1678992--1679529
81
6.7
79
86
3
675
35
11
24
29
1.90
1678995--1679504
243
2.1
241
89
4
758
34
11
24
29
1.90
1680469--1680511
20
2.2
20
84
12
54
20
20
9
48
1.77
1683622--1683675
12
4.6
12
83
2
74
29
37
0
33
1.58
1687052--1687137
24
3.6
24
87
0
118
16
43
16
24
1.87
1688362--1688415
12
4.7
12
84
6
76
27
37
0
35
1.57
1688436--1688526
41
2.2
40
96
3
164
26
12
19
41
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1690872--1690978
35
3.0
36
94
2
189
35
14
14
34
1.88
1692480--1692518
19
2.1
19
100
0
78
58
0
15
25
1.37
1695605--1695696
31
3.0
31
95
0
166
33
9
28
28
1.89
1696252--1696358
35
3.0
36
94
2
189
35
14
14
34
1.88
1700524--1700596
26
2.8
26
97
0
137
36
21
6
34
1.81
1701306--1701367
29
2.1
29
82
5
72
40
1
19
38
1.61
1703109--1703146
15
2.5
16
83
12
53
34
2
7
55
1.43
1705631--1705819
78
2.4
78
84
6
224
38
17
6
37
1.76
1707812--1707846
16
2.2
16
89
0
52
62
0
0
37
0.95
1708235--1709015
236
3.3
237
88
5
1131
24
19
24
31
1.98
1718833--1718881
20
2.5
20
80
3
55
16
18
0
65
1.28
1731644--1731690
8
5.6
9
80
12
55
76
2
21
0
0.89
1731654--1731698
8
5.8
8
82
17
51
77
2
20
0
0.87
1731644--1731699
17
3.5
16
79
15
71
75
1
23
0
0.90
1731654--1731698
15
3.0
14
84
12
54
77
2
20
0
0.87
1735086--1735123
2
19.0
2
100
0
76
50
0
0
50
1.00
1735150--1735204
21
2.7
21
75
13
60
12
10
0
76
1.02
1735125--1735212
30
2.6
34
74
20
85
17
9
0
73
1.07
1735269--1735346
25
3.2
24
73
22
74
20
7
0
71
1.10
1735280--1735346
4
16.8
4
74
22
61
22
5
0
71
1.07
1737946--1738797
241
3.6
239
88
3
1225
23
19
24
32
1.97

Tables:   1   2   3   4   5   6   7   8   9

The End!