genome.fa.s9012.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009012.1 Hibiscus syriacus cultivar Beakdansim tig00112400_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  359633

Tables:   1   2   

This is table  2  of  2  ( 179 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244419--244471	24	2.2	25	86	10	83	26	16	24	32	1.97
246003--246083	33	2.4	33	81	6	92	39	13	20	25	1.90
247718--247767	22	2.2	23	92	3	84	40	18	22	20	1.92
248422--248550	56	2.3	55	80	5	150	24	26	18	30	1.98
249990--250054	30	2.2	30	83	5	78	36	16	7	38	1.78
255720--255752	2	16.5	2	100	0	66	48	0	0	51	1.00
258587--259065	43	11.0	43	74	8	206	25	17	7	50	1.71
258700--259114	44	9.6	44	74	9	232	25	19	7	47	1.75
258700--259143	131	3.4	129	78	9	429	25	19	7	47	1.75
258877--259056	87	2.1	88	91	3	292	25	18	8	47	1.77
258676--259065	44	9.0	44	76	8	325	24	18	8	48	1.75
265060--265098	19	2.0	19	85	5	51	30	0	2	66	1.05
271286--271327	21	2.0	21	100	0	84	23	19	14	42	1.87
275932--275979	21	2.3	21	96	0	87	27	18	12	41	1.86
276930--276987	30	2.0	29	81	15	68	56	15	8	18	1.64
278313--278382	30	2.3	30	85	2	86	40	17	1	41	1.58
279018--279051	6	5.7	6	85	0	50	47	0	35	17	1.48
279146--279170	6	4.2	6	100	0	50	36	48	0	16	1.46
280907--280931	11	2.3	11	100	0	50	40	0	0	60	0.97
284407--284496	30	3.0	30	100	0	180	33	23	20	23	1.97
286358--286388	12	2.6	12	89	0	53	9	29	16	45	1.79
286463--286567	31	3.3	31	73	15	104	19	19	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286456--286555	35	3.0	34	70	16	109	16	22	25	37	1.93
286456--286582	66	1.9	66	93	0	218	18	21	24	35	1.96
286478--286588	31	3.5	31	75	13	107	21	19	21	36	1.95
287125--287180	22	2.5	22	94	0	103	26	23	21	28	1.99
293521--293604	38	2.3	36	84	12	109	14	10	38	36	1.81
293747--293830	38	2.2	38	93	6	145	11	10	39	38	1.77
294407--294452	18	2.7	18	86	6	69	28	30	6	34	1.82
303588--303660	32	2.3	32	100	0	146	27	27	24	20	1.99
303588--303674	32	2.7	32	89	3	95	27	29	25	17	1.97
309651--310725	105	10.2	105	97	0	1943	22	22	19	35	1.96
311526--312380	54	15.7	55	87	4	963	40	16	10	32	1.84
311526--312380	109	7.9	109	87	2	1028	40	16	10	32	1.84
311531--312380	163	5.2	163	88	2	1118	39	16	11	32	1.84
314349--314426	23	3.3	25	82	12	103	0	8	1	89	0.53
314351--314426	1	76.0	1	81	0	89	0	7	1	90	0.50
315803--315853	21	2.3	23	80	9	63	60	7	15	15	1.56
320190--320228	6	6.7	6	83	16	55	69	0	0	30	0.89
320197--320228	17	1.9	17	93	6	57	71	0	0	28	0.86
327327--327364	16	2.4	16	95	4	69	63	7	7	21	1.47
327433--327491	31	1.9	31	92	0	100	44	6	8	40	1.61
327819--327942	61	2.0	62	85	1	169	33	7	25	33	1.83
334155--334232	35	2.2	35	93	0	129	30	24	24	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335771--335838	23	3.0	23	86	0	100	17	26	26	29	1.98
341454--342423	105	9.2	105	97	0	1769	22	22	19	35	1.96
343177--343348	54	3.2	53	80	4	159	41	18	11	28	1.84
343225--343916	54	12.7	55	86	4	782	40	16	11	32	1.84
343225--343916	109	6.4	109	86	3	772	40	16	11	32	1.84
343230--343916	163	4.2	163	85	2	860	39	16	11	32	1.84
345882--346001	11	11.3	10	73	15	73	2	15	2	79	0.95
345921--345995	31	2.3	32	84	11	100	0	17	4	78	0.90
345919--346001	12	6.6	12	79	16	80	0	15	3	80	0.84
345919--346000	13	6.5	13	85	12	91	0	15	3	80	0.85
345947--346008	19	3.2	19	80	15	74	0	11	8	80	0.90
345946--346009	20	3.2	20	80	14	80	0	10	7	81	0.88
345928--346027	50	2.0	51	84	9	134	3	13	5	79	1.02
347378--347428	21	2.3	23	80	9	63	60	7	15	15	1.56
352064--352094	13	2.4	13	100	0	62	38	0	0	61	0.96

Tables:   1   2

The End!