genome.fa.s9013.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009013.1 Hibiscus syriacus cultivar Beakdansim tig00112401_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  323053

Tables:   1   2   

This is table  1  of  2  ( 157 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5928--6018	45	2.0	45	100	0	182	41	10	13	34	1.79
13504--13531	12	2.3	12	100	0	56	50	0	0	50	1.00
13761--13873	51	2.2	51	85	3	147	25	13	15	45	1.83
17364--17415	18	2.9	18	94	0	86	25	32	25	17	1.97
17764--17828	28	2.4	28	97	2	123	50	9	0	40	1.34
20966--20992	4	6.8	4	100	0	54	51	22	0	25	1.48
23109--23288	65	2.8	63	76	15	172	28	16	22	32	1.95
23132--23288	65	2.4	65	81	7	178	28	15	21	34	1.94
23773--23820	2	24.0	2	100	0	96	50	0	0	50	1.00
29899--30058	65	2.5	65	84	7	202	28	17	23	31	1.97
29899--30100	65	3.1	62	76	12	185	26	17	24	31	1.97
30937--31000	32	2.0	32	84	3	83	42	28	14	15	1.86
31058--31113	18	3.1	19	75	12	55	55	0	5	39	1.23
31938--31969	15	2.1	15	94	0	55	34	37	18	9	1.83
36330--36364	12	2.9	12	95	0	61	54	40	0	5	1.24
43218--43242	2	12.5	2	100	0	50	48	0	0	52	1.00
58617--58654	20	1.9	20	88	0	58	26	34	26	13	1.93
60020--60045	12	2.2	12	100	0	52	26	34	38	0	1.57
62160--62355	103	1.9	104	81	1	241	32	15	22	29	1.95
69077--69105	2	14.5	2	100	0	58	48	0	0	51	1.00
69411--69465	28	2.0	28	85	0	74	34	7	1	56	1.38
69524--69575	16	3.1	16	71	10	50	69	0	1	28	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69486--69617	30	4.4	31	79	7	130	56	1	3	39	1.24
69568--69658	46	2.0	45	85	12	123	49	1	5	43	1.33
69679--69775	27	3.6	27	80	12	110	55	0	6	38	1.25
69614--69781	29	5.7	29	70	17	114	51	0	5	41	1.30
69485--69981	195	2.5	184	78	13	430	53	2	4	39	1.35
70064--70140	30	2.6	30	87	0	109	19	6	31	42	1.76
78357--78390	16	2.1	17	89	10	54	23	0	2	73	0.97
78355--78392	15	2.5	15	80	20	51	26	0	5	68	1.11
79356--79417	23	2.6	24	94	5	117	38	0	3	58	1.15
82312--82351	19	2.1	19	100	0	80	20	20	27	32	1.97
85034--85089	22	2.6	21	83	8	67	78	0	10	10	0.96
101315--101356	20	2.1	20	86	8	59	78	0	7	14	0.95
101320--101363	17	2.5	17	88	3	61	79	0	6	13	0.92
102335--102398	20	3.2	20	63	10	51	40	10	25	23	1.87
102803--102901	41	2.3	42	84	5	128	30	22	19	28	1.98
102886--102980	43	2.2	43	83	5	111	32	21	14	31	1.93
103053--103149	43	2.2	44	85	7	128	28	17	17	36	1.93
102706--103476	259	3.0	257	83	4	958	31	17	17	33	1.93
109661--109698	19	2.0	19	100	0	76	26	26	10	36	1.89
109795--109875	31	2.6	30	81	15	85	49	1	0	49	1.08
109798--109876	30	2.6	28	77	15	70	50	1	0	48	1.08
109807--109922	54	2.2	52	79	13	123	51	0	0	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109784--109973	29	6.1	31	69	20	96	49	0	1	48	1.12
109920--109972	20	2.7	19	73	18	54	49	0	1	49	1.12
109967--110011	23	2.0	23	86	0	63	53	2	2	42	1.25
114831--114930	26	3.8	26	87	6	148	27	20	0	53	1.46
118498--118568	20	3.5	20	94	3	117	35	40	11	12	1.79
125762--125925	76	2.2	76	88	3	242	56	10	2	29	1.47
127771--127821	8	5.8	8	82	17	57	84	1	1	11	0.79
127773--127829	28	2.0	28	86	6	80	84	3	1	10	0.82
127771--127829	29	2.1	28	90	3	91	83	3	1	11	0.85
127775--127829	21	2.6	22	83	8	62	83	3	1	10	0.84
127774--127832	22	2.7	22	81	2	66	83	3	1	11	0.85
127790--127832	14	3.1	14	79	0	50	81	4	2	11	0.93
131730--131763	15	2.3	15	100	0	68	5	26	23	44	1.76
134181--134350	76	2.2	76	87	4	245	57	10	2	30	1.45
135233--135278	19	2.3	20	75	14	51	47	0	2	50	1.13
135333--135387	24	2.2	25	83	3	67	50	1	0	47	1.11
141491--145189	651	5.7	651	94	0	6313	37	18	16	27	1.92
145209--145256	23	2.1	23	100	0	96	35	22	20	20	1.96
145430--145544	24	4.8	24	87	4	160	40	19	15	25	1.91
145406--145561	48	3.2	48	79	7	129	43	19	12	24	1.86
145410--145561	72	2.1	71	80	10	175	43	19	13	24	1.86
148930--148979	24	1.9	28	84	15	72	58	4	0	38	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148976--149012	17	2.2	17	100	0	74	43	24	5	27	1.76
152644--152698	25	2.2	25	93	0	92	25	23	18	32	1.97
156563--156599	19	1.9	19	100	0	74	37	18	5	37	1.74
158990--159045	25	2.2	25	100	0	112	55	10	19	14	1.68
159450--159494	23	2.0	23	90	0	72	28	2	2	66	1.15
159447--159516	3	24.0	3	75	16	58	35	1	1	61	1.14
161216--161265	19	2.6	19	75	9	57	54	0	0	46	1.00
165383--165439	25	2.3	24	80	14	62	38	17	5	38	1.72
166553--166607	28	2.0	27	82	13	67	25	20	9	45	1.80
169993--170060	31	2.2	31	89	0	100	52	10	7	29	1.62
170168--170204	12	3.1	12	96	0	65	29	2	0	67	1.04
177529--177634	24	4.4	24	74	0	86	50	16	15	17	1.78
177529--177632	48	2.2	48	82	0	118	50	16	14	18	1.77
187547--187751	74	2.8	73	80	12	217	23	20	27	28	1.99
187631--187668	20	1.9	20	100	0	76	18	21	31	28	1.97
187635--187678	20	2.3	19	84	7	54	20	22	29	27	1.99
187574--187756	74	2.4	75	84	10	232	21	20	28	29	1.98
187626--187767	76	1.9	74	88	5	214	20	22	29	27	1.98
189110--189359	135	1.8	136	85	5	353	32	15	22	30	1.95
191747--191793	19	2.5	19	96	0	85	63	4	14	17	1.45
193827--193940	56	2.0	58	84	6	153	34	9	22	33	1.87
194657--194708	16	3.4	16	73	26	51	65	7	0	26	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195819--195843	13	1.9	13	100	0	50	0	8	40	52	1.31
195899--195955	20	2.7	21	83	5	71	54	0	1	43	1.10
195894--195965	20	3.3	20	72	22	65	56	0	1	41	1.07
197464--197492	2	14.5	2	100	0	58	51	0	0	48	1.00
208154--208192	20	2.0	20	100	0	78	30	15	25	28	1.96
208155--208204	20	2.5	20	90	0	73	34	16	22	28	1.95
208170--208820	258	2.5	256	84	3	827	33	17	16	31	1.93
208715--208811	42	2.3	42	83	1	124	32	23	19	23	1.97
208882--208917	16	2.3	16	95	4	65	61	0	0	38	0.96
209060--211113	258	7.7	258	72	13	1449	35	16	14	33	1.90
209799--209901	42	2.5	42	83	1	136	33	21	22	23	1.98
209972--210005	13	2.7	13	95	4	61	55	0	0	44	0.99
210882--210984	42	2.5	42	82	7	138	33	20	21	24	1.97
215319--215371	20	2.7	20	84	0	70	24	33	15	26	1.95
215436--215484	15	2.9	16	85	11	55	24	28	26	20	1.99
218561--218617	18	3.1	18	81	16	71	31	8	8	50	1.64
218561--218608	18	2.4	21	90	10	75	35	10	8	45	1.68
218841--218894	20	2.7	20	88	0	81	24	31	18	25	1.97
218980--219015	15	2.4	15	90	0	54	27	22	25	25	2.00
219391--219461	34	2.1	33	86	2	97	32	15	29	22	1.95
230250--230413	67	2.4	67	84	2	204	25	19	14	41	1.88
230527--230553	14	1.9	14	100	0	54	51	7	7	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230520--230553	14	2.5	13	86	9	50	50	8	5	35	1.58
230959--231216	137	1.9	137	82	1	329	33	27	15	23	1.95
231420--231444	3	8.3	3	100	0	50	32	32	0	36	1.58
231443--231518	3	25.0	3	91	2	125	31	2	1	64	1.15
233280--233371	39	2.4	38	83	7	105	25	3	2	69	1.15
233316--233360	16	2.7	17	86	3	65	17	2	2	77	0.97
233317--233379	11	6.4	10	73	21	53	20	3	1	74	1.04
233316--233374	16	3.9	15	77	20	61	18	3	1	76	1.02
233313--233379	5	12.6	5	77	12	62	20	2	1	74	1.03
233868--233897	10	3.0	10	90	0	51	56	10	0	33	1.32

Tables:   1   2