Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009013.1 Hibiscus syriacus cultivar Beakdansim tig00112401_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  323053

Tables:   1   2   

This is table  2  of  2  ( 157 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
240530--240562
12
2.8
12
86
4
50
33
27
0
39
1.57
243460--243509
20
2.5
20
83
6
57
34
0
26
40
1.56
244035--244088
26
2.0
27
92
3
92
33
7
11
48
1.67
244238--244366
69
1.9
69
88
0
195
28
17
23
30
1.97
251104--251137
17
2.1
17
88
5
52
67
8
8
14
1.41
260598--260695
24
4.1
24
89
5
153
51
17
13
18
1.77
260598--260695
12
8.2
12
73
8
83
51
17
13
18
1.77
262631--262679
20
2.5
19
81
15
55
48
4
22
24
1.67
264332--264374
22
2.0
22
81
9
52
11
16
9
62
1.53
264343--264384
22
1.9
22
85
0
57
7
14
9
69
1.37
267848--267956
55
2.0
55
92
0
182
37
18
11
32
1.87
271990--272108
60
2.0
60
81
3
141
42
7
10
40
1.67
277305--277430
47
2.8
45
86
5
173
31
23
7
37
1.82
277539--277667
59
2.2
59
85
0
168
30
25
16
27
1.97
284946--285082
59
2.3
58
82
2
175
29
24
17
28
1.97
294439--294492
23
2.3
23
84
6
65
55
1
1
40
1.21
294609--294677
23
3.0
23
82
6
68
52
1
1
44
1.19
294778--294821
14
3.1
14
83
6
61
34
11
0
54
1.36
294778--294832
14
3.9
14
78
4
56
32
10
3
52
1.54
294780--294841
29
2.2
29
85
2
81
35
11
3
50
1.55
296383--296408
3
8.7
3
100
0
52
30
0
0
69
0.89
298478--298647
82
2.1
82
87
2
243
37
10
15
37
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
305768--305850
37
2.2
37
84
0
112
36
19
6
38
1.76
305769--305839
37
1.9
37
91
0
115
39
16
5
38
1.73
306158--306571
67
6.0
67
82
8
415
27
18
15
39
1.90
306241--306610
37
10.5
37
73
15
291
27
17
14
40
1.89
306279--306389
30
3.5
30
67
15
87
27
20
14
37
1.91
306308--306612
37
8.5
36
78
10
322
26
17
15
40
1.89
306499--306560
15
3.2
20
67
28
62
20
17
17
43
1.88
306607--307032
139
3.1
139
87
1
541
30
26
16
27
1.96
308633--308667
8
4.2
8
92
7
61
14
0
0
85
0.59
308635--308671
9
4.2
9
89
6
58
13
0
0
86
0.57
308633--308671
17
2.3
17
95
0
69
15
0
0
84
0.62
311058--311087
6
5.0
6
100
0
60
33
0
16
50
1.46
314555--314641
16
5.1
18
72
17
69
78
0
14
6
0.95
314563--314630
14
4.8
14
71
20
52
79
0
13
7
0.93
314562--314654
30
3.0
31
76
14
95
78
0
13
7
0.95

Tables:   1   2

The End!