genome.fa.s9018.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009018.1 Hibiscus syriacus cultivar Beakdansim tig00112408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  522392

Tables:   1   2   

This is table  2  of  2  ( 225 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283600--283841	2	125.5	2	66	21	108	43	2	4	48	1.37
283627--283729	7	15.3	7	71	21	53	47	2	2	46	1.32
283627--283729	19	5.1	19	72	20	68	47	2	2	46	1.32
283627--283779	54	2.9	52	80	8	157	44	2	3	49	1.34
283699--283803	5	21.0	5	69	23	53	40	1	3	54	1.30
283718--283777	19	3.2	20	79	6	56	40	1	5	53	1.33
289489--289808	160	2.0	160	98	1	615	43	18	16	22	1.88
290720--290755	5	7.0	5	90	6	54	0	61	0	38	0.96
290746--290792	14	3.4	14	88	2	69	0	53	0	46	1.00
290718--290783	20	3.7	18	73	17	57	0	59	0	40	0.98
291337--291377	21	2.0	20	85	4	55	53	2	0	43	1.13
294637--294662	12	2.2	12	100	0	52	30	26	0	42	1.56
306108--306241	68	1.9	70	96	3	254	56	9	8	24	1.60
307835--308081	122	2.0	123	94	0	433	38	15	8	37	1.78
307851--308081	123	1.9	119	93	0	363	38	16	8	37	1.78
311990--312036	23	2.0	23	100	0	94	46	12	12	27	1.78
311996--312045	23	2.5	20	84	15	59	48	12	16	24	1.79
313567--313788	111	2.0	111	100	0	444	32	17	21	28	1.96
313812--313933	61	2.0	61	100	0	244	44	21	11	22	1.84
314364--314418	23	2.4	24	78	9	69	25	5	27	41	1.77
314381--314538	79	2.0	79	100	0	316	34	7	17	40	1.78
318303--318331	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318315--318563	137	1.8	137	88	5	387	47	8	7	36	1.61
318693--318745	23	2.3	22	81	18	63	66	5	0	28	1.15
318750--318826	30	2.5	30	76	14	77	66	2	5	25	1.26
318826--318889	29	2.3	27	79	15	67	54	6	6	32	1.50
319932--319999	33	2.1	33	86	5	93	73	1	1	23	1.00
320459--320638	99	1.8	99	87	3	265	27	20	14	37	1.91
320606--320732	64	2.0	64	82	3	157	25	18	20	34	1.96
321087--321144	22	2.6	22	91	5	91	36	15	15	32	1.89
321410--321551	54	2.6	54	80	0	176	24	23	14	37	1.93
322270--322438	75	2.3	75	84	0	203	31	20	16	31	1.95
329250--329290	6	6.0	7	83	16	59	56	12	17	14	1.68
329902--329973	36	2.0	36	91	0	117	27	11	20	40	1.87
330753--330785	17	1.9	17	88	11	50	72	0	0	27	0.85
330759--330833	29	2.6	30	81	10	86	62	1	4	32	1.22
330776--330833	28	2.2	26	84	6	71	60	1	5	32	1.29
333014--333050	3	13.0	3	83	11	51	67	0	0	32	0.91
333015--333063	22	2.2	22	88	0	71	71	0	2	26	0.97
333015--333069	16	3.4	16	80	11	51	74	0	1	23	0.91
334402--334446	22	2.0	22	86	0	63	44	28	17	8	1.79
342893--343411	201	2.6	201	86	3	679	33	17	20	28	1.95
344189--344264	26	2.8	28	76	13	88	51	1	3	43	1.28
344189--344254	2	33.5	2	74	19	59	50	1	3	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344199--344271	30	2.4	31	80	13	80	52	1	4	42	1.29
344256--344363	39	2.8	38	78	9	105	44	6	9	39	1.62
344327--344377	24	2.2	24	85	3	68	43	7	7	41	1.63
344326--344383	23	2.4	24	77	5	64	44	6	6	41	1.58
344288--344409	60	2.0	63	85	4	169	42	6	9	41	1.62
346579--346641	26	2.5	26	89	2	92	36	6	42	14	1.71
356530--356575	3	15.3	3	100	0	92	65	0	34	0	0.93
363144--363202	29	2.1	27	81	12	66	59	10	6	23	1.54
373249--373291	17	2.5	17	85	14	54	39	16	18	25	1.91
377064--377235	90	1.9	89	93	1	299	37	11	5	45	1.64
393788--394053	133	2.0	133	93	0	460	29	25	23	20	1.99
394928--395397	238	2.0	221	86	9	642	30	13	17	38	1.88
402150--402188	17	2.3	17	100	0	78	46	7	15	30	1.74
402347--402486	36	3.9	36	85	1	176	22	25	19	33	1.97
402347--402478	71	1.9	71	85	6	187	23	25	19	31	1.98
408789--408868	23	3.6	22	73	19	76	23	26	21	28	1.99
411021--411081	2	30.5	2	100	0	122	49	0	0	50	1.00
417664--417690	13	2.1	13	100	0	54	48	22	0	29	1.51
423963--424007	20	2.2	21	88	7	67	44	11	0	44	1.39
424010--424046	18	2.0	18	89	5	56	54	5	0	40	1.24
428740--428878	66	2.1	67	97	2	262	28	25	11	33	1.91
432518--432587	3	24.0	3	91	5	117	64	0	34	1	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433575--433603	12	2.3	13	94	5	51	27	24	6	41	1.80
434555--434648	43	2.2	43	98	0	179	23	28	12	35	1.92
442073--442126	20	2.8	18	81	13	54	72	3	9	14	1.24
453047--453137	36	2.5	36	90	0	146	29	17	25	27	1.97
466043--466071	14	2.1	14	100	0	58	41	24	6	27	1.80
478072--478149	26	3.0	26	94	3	131	53	6	8	30	1.57
478136--478201	24	2.8	24	75	9	64	68	6	1	24	1.21
478159--478192	18	1.9	17	88	5	50	79	2	0	17	0.86
478133--478201	23	2.8	25	74	12	72	68	5	1	24	1.20
480232--480834	301	2.0	300	98	0	1161	37	20	12	28	1.89
481186--481234	20	2.4	21	83	6	57	22	18	30	28	1.97
485149--485186	19	1.9	20	89	10	60	28	13	15	42	1.85
485218--485287	21	3.3	20	70	20	54	25	17	22	34	1.96
485230--485305	21	3.6	21	76	0	71	26	17	25	31	1.97
494042--494078	16	2.3	17	86	9	51	56	5	5	32	1.45
494897--495126	59	3.9	59	74	13	136	59	11	13	16	1.62
494905--495138	30	7.9	29	75	9	154	58	11	13	15	1.63
494920--495126	89	2.3	90	79	12	230	58	12	13	15	1.62
496541--496580	19	2.1	19	95	0	71	65	0	0	35	0.93
496541--496580	3	12.7	3	84	10	53	65	0	0	35	0.93
496541--496580	16	2.5	16	88	8	55	65	0	0	35	0.93
496768--497080	133	2.3	134	84	0	403	25	16	31	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497125--497182	31	2.0	30	90	10	93	48	13	13	24	1.79
497398--497532	65	2.0	66	88	2	200	42	14	14	28	1.84
499300--499335	2	18.5	2	88	5	56	50	2	0	47	1.15
502895--502952	21	2.7	21	86	2	80	43	6	5	44	1.53
503856--504192	30	11.3	30	75	8	235	58	10	13	18	1.62
503858--504192	59	5.6	60	74	10	208	58	10	13	18	1.62
503907--504192	89	3.2	89	74	11	239	58	9	13	18	1.62
507573--507612	19	2.1	19	100	0	80	47	5	5	42	1.47
507582--507623	19	2.2	19	86	0	57	57	4	7	30	1.47
507859--507889	16	1.9	16	93	0	53	6	16	48	29	1.70
509983--510025	18	2.4	18	92	0	68	20	6	0	72	1.08
518117--518170	3	17.0	3	92	7	81	62	0	0	37	0.95
518429--518491	20	3.0	22	66	17	60	20	20	20	38	1.94
518471--519037	45	12.6	45	87	0	774	35	19	21	23	1.96
519008--519078	34	2.1	34	94	0	124	38	16	25	19	1.93
519317--519459	22	6.5	22	95	0	250	39	13	13	32	1.85
519818--519977	53	3.0	53	91	1	239	27	21	15	36	1.93

Tables:   1   2

The End!