genome.fa.s902.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000902.1 Hibiscus syriacus cultivar Beakdansim tig00001773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132748

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1880--1916	19	2.1	18	90	10	58	72	0	10	16	1.10
2033--2097	30	2.2	30	83	10	80	63	9	10	16	1.52
2401--2488	45	2.0	43	86	8	124	29	23	14	31	1.95
3034--3086	2	27.5	2	92	7	92	52	0	0	47	1.00
3661--3736	40	1.9	40	86	0	107	28	7	23	39	1.83
3734--3818	36	2.4	36	88	5	129	38	12	22	25	1.90
3932--4152	111	2.0	111	90	1	345	23	20	25	30	1.98
4332--4631	149	2.0	149	98	0	573	23	19	25	31	1.98
7639--7682	21	2.0	21	82	4	52	18	34	4	43	1.70
9901--9937	19	2.0	18	89	5	56	56	5	0	37	1.22
10063--10099	19	2.1	18	90	10	58	72	0	10	16	1.10
10220--10284	30	2.2	30	83	10	80	63	9	12	15	1.52
12862--12948	41	2.1	42	95	2	158	28	4	1	65	1.19
14496--14593	35	2.8	35	87	0	142	36	12	13	37	1.82
16206--16278	37	2.0	38	91	5	123	32	4	17	45	1.68
18694--18910	108	2.0	108	99	0	425	41	6	5	46	1.53
25381--25428	16	2.8	18	78	12	57	62	2	0	35	1.07
26817--26861	21	2.1	21	87	0	63	31	28	24	15	1.96
27839--27960	63	2.0	62	86	4	174	29	19	18	31	1.96
27836--27963	31	4.1	31	77	9	134	28	18	19	33	1.96
27949--28080	30	4.4	30	95	0	221	21	20	25	31	1.98
31452--31496	21	2.1	21	87	0	63	31	28	24	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32457--32584	31	4.1	31	80	9	152	26	18	21	33	1.96
32570--32701	30	4.4	30	94	0	212	21	21	25	31	1.98
36111--36155	21	2.1	21	87	0	63	31	28	24	15	1.96
37124--37251	31	4.1	31	74	13	118	28	18	19	33	1.96
37126--37254	63	2.1	61	84	9	172	28	20	18	32	1.96
37237--37368	30	4.4	30	95	0	221	21	20	25	31	1.98
37638--37687	2	25.0	2	100	0	100	50	0	0	50	1.00
38295--38336	21	2.0	21	95	0	75	26	28	21	23	1.99
38585--38644	29	2.0	31	90	6	97	41	16	6	35	1.75
39889--39936	19	2.5	20	82	3	62	29	12	6	52	1.63
41292--41352	19	3.2	19	90	0	86	34	11	11	42	1.77
41319--41357	19	2.1	19	90	0	60	43	5	7	43	1.55
41422--41481	29	2.0	29	87	6	84	40	16	8	35	1.79
43052--43078	14	1.9	14	100	0	54	29	3	0	66	1.09
47890--47954	27	2.5	26	87	5	94	18	16	13	50	1.78
47901--47946	15	3.3	15	76	14	53	19	17	8	54	1.68
47901--47954	27	2.0	27	96	0	99	20	18	11	50	1.77
46033--49516	904	3.7	940	89	6	5170	29	18	17	34	1.94
49568--49706	39	3.6	39	77	8	124	38	15	0	45	1.52
57841--57880	20	2.0	20	85	9	55	10	15	10	65	1.48
70257--70377	57	2.1	60	85	4	167	52	12	1	33	1.49
76370--76435	30	2.2	30	83	5	80	34	22	30	12	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78770--78825	24	2.3	24	96	0	103	37	14	17	30	1.90
83224--83258	17	2.1	17	94	0	61	28	5	14	51	1.65
83922--84014	21	4.5	21	78	4	100	39	18	24	17	1.91
83922--84014	41	2.3	41	100	0	186	39	18	24	17	1.91
83941--84075	41	3.3	41	82	6	132	38	20	21	19	1.94
84003--84097	20	4.7	20	80	2	91	34	24	17	23	1.96
84293--84336	22	2.0	22	95	0	79	20	45	15	18	1.85
84601--84638	20	1.9	20	88	0	58	13	15	21	50	1.78
85956--86000	18	2.5	18	88	0	72	26	44	15	13	1.83
86478--86601	19	7.1	19	73	16	72	43	20	20	14	1.87
86522--86579	14	3.9	14	79	16	71	48	24	17	10	1.78
86506--86596	32	2.8	33	94	3	166	47	21	18	12	1.81
86613--86670	14	3.9	14	77	16	62	10	17	24	48	1.78
86608--86686	32	2.4	33	93	2	133	11	18	22	46	1.81
86659--86725	19	3.5	19	85	4	80	16	23	22	37	1.94
86671--86725	20	2.8	19	89	5	83	16	25	23	34	1.95
88734--88786	14	3.5	14	75	24	54	47	20	20	11	1.81
88715--88791	32	2.4	33	88	2	111	41	22	23	12	1.88
88745--88791	14	2.8	17	75	24	55	46	19	21	12	1.82
89907--89960	24	2.2	24	90	0	81	24	16	20	38	1.92
92267--92359	42	2.2	42	81	5	107	24	16	37	21	1.93
94355--94534	19	9.8	19	72	17	121	45	22	21	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94380--94478	33	3.0	33	87	1	135	40	26	22	11	1.87
94450--94539	19	4.7	19	91	2	144	47	22	18	11	1.80
94450--94534	39	2.2	38	93	2	143	49	22	17	10	1.77
94539--94575	19	1.9	19	88	0	56	10	16	21	51	1.74
94546--94598	19	2.7	19	88	2	70	13	18	22	45	1.84
95120--95171	20	2.6	20	93	0	86	25	19	28	26	1.98
95182--95274	20	4.5	21	77	4	91	17	24	17	40	1.90
95201--95274	20	3.7	20	80	3	94	17	22	18	40	1.91
95164--95274	41	2.7	41	92	4	179	17	22	17	43	1.88
100505--100561	27	2.1	27	100	0	114	28	19	19	33	1.96
122285--122315	2	16.0	2	93	6	55	51	0	0	48	1.00
122798--122872	36	2.1	36	85	5	98	46	1	4	48	1.29
123017--123054	20	1.9	20	88	0	58	21	26	10	42	1.85
124837--124902	20	3.3	20	91	2	107	48	3	21	27	1.64
125045--125075	15	2.1	15	93	0	53	54	0	0	45	0.99
131351--131416	29	2.3	29	100	0	132	33	22	16	27	1.96

Tables:   1

The End!