genome.fa.s9020.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009020.1 Hibiscus syriacus cultivar Beakdansim tig00112410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107425

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3024--3664	8	84.8	8	68	22	293	40	3	6	50	1.43
3049--3477	55	7.3	58	73	18	111	40	3	6	49	1.45
3270--3345	21	3.5	22	70	20	79	38	5	5	51	1.47
3388--3570	39	4.8	38	82	9	171	40	2	7	50	1.42
2991--3664	47	15.9	47	73	19	361	40	3	5	50	1.43
2998--3706	14	52.9	13	69	20	275	40	3	5	50	1.44
5892--6243	168	2.1	170	87	5	509	37	18	5	39	1.73
6747--6802	21	2.6	21	81	13	78	16	35	17	30	1.92
10471--10503	17	1.9	17	93	0	57	51	18	0	30	1.46
11147--11264	59	2.0	59	100	0	236	38	5	10	45	1.60
11330--11354	13	1.9	13	100	0	50	60	0	8	32	1.26
16836--16870	2	17.5	2	100	0	70	51	0	0	48	1.00
41841--41866	4	6.5	4	100	0	52	23	50	0	26	1.50
44852--44890	21	1.9	21	89	5	62	38	2	17	41	1.64
62921--62975	14	3.9	15	76	21	57	61	1	0	36	1.06
63666--63700	2	17.5	2	93	0	61	48	0	2	48	1.16
63763--63798	18	2.1	18	89	5	56	44	0	0	55	0.99
69800--69846	23	2.0	23	83	0	58	31	10	14	42	1.80
70892--70929	3	13.0	3	94	5	69	0	31	0	68	0.90
78543--78665	15	8.3	15	89	1	178	52	0	0	46	1.12
78543--78709	45	3.6	45	84	8	178	48	0	2	48	1.19
78653--78753	22	4.5	22	71	7	94	38	0	9	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78673--78708	14	2.5	14	95	4	63	41	0	0	58	0.98
78561--78708	15	9.5	15	84	10	172	47	0	2	50	1.17
78688--78839	32	5.4	32	70	28	155	35	0	11	53	1.37
78606--78763	69	2.3	67	84	6	203	43	0	6	50	1.27
78688--78856	54	3.1	54	97	0	320	34	0	11	53	1.38
78791--79106	80	3.8	80	87	8	479	31	0	13	54	1.40
78841--79111	58	4.8	57	74	16	242	31	0	14	54	1.40
78946--79089	32	4.7	32	81	13	194	31	0	13	54	1.40
78688--79191	192	2.6	197	83	13	594	33	0	13	53	1.39
79069--79128	22	2.7	22	100	0	120	33	0	15	51	1.43
79011--79213	102	2.0	102	97	0	379	33	0	14	52	1.42
79237--79293	30	1.9	30	92	0	96	45	7	7	40	1.58
79870--79964	47	2.0	47	95	0	172	24	10	41	24	1.86
82469--82495	3	9.0	3	100	0	54	33	0	0	66	0.92
86164--86198	17	2.1	17	100	0	70	40	17	0	42	1.49
86387--86430	21	2.1	21	83	8	54	63	2	6	27	1.31
92399--92441	2	21.5	2	100	0	86	0	48	0	51	1.00
96593--96644	20	2.6	20	96	0	95	38	26	13	21	1.90
96700--96893	20	9.6	20	76	8	76	35	25	19	19	1.95
96696--96893	40	5.0	39	81	4	200	35	26	19	19	1.95
96700--96892	60	3.2	60	83	0	251	35	25	19	19	1.95
97274--97344	33	2.2	33	92	0	115	11	22	18	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97427--97479	20	2.6	20	87	3	70	50	16	20	11	1.76
97463--97519	14	3.7	14	75	20	60	43	22	24	8	1.81
97443--97535	33	2.8	33	90	1	132	46	23	21	8	1.79
97531--97628	19	5.7	19	70	22	81	10	24	22	42	1.84
97553--97642	14	5.7	14	74	23	81	8	25	23	42	1.83
97536--97650	33	3.5	33	95	0	212	9	24	20	45	1.81
99344--99814	185	2.6	184	98	0	915	22	12	18	46	1.83
99344--99814	93	5.1	93	97	1	903	22	12	18	46	1.83
99857--99985	19	7.3	19	75	17	125	45	28	17	8	1.77
99893--99985	33	2.8	32	91	4	150	46	27	18	7	1.76
99857--99985	52	2.5	52	74	14	140	45	28	17	8	1.77
99981--100115	19	7.6	19	75	16	128	11	19	23	45	1.82
100003--100059	14	3.7	14	77	20	60	10	21	22	45	1.82
99986--100078	33	2.8	33	95	0	168	10	20	21	47	1.80
102016--102047	14	2.3	14	94	0	55	34	0	21	43	1.53
102142--102239	19	5.4	19	82	15	136	43	17	24	14	1.86
102268--102541	19	15.4	19	82	15	363	13	20	18	47	1.83
102246--102513	52	5.0	52	93	4	446	14	21	17	46	1.83
102268--102508	109	2.3	102	85	9	185	14	21	17	46	1.83
105015--105061	24	2.0	24	87	8	69	38	21	14	25	1.92
105739--106066	20	16.5	20	86	5	387	20	18	25	35	1.95
106560--106652	21	4.4	21	84	10	118	20	19	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107080--107301	111	2.0	110	90	5	347	13	28	30	27	1.94
107080--107297	109	2.0	108	90	5	341	13	28	30	27	1.94

Tables:   1

The End!