genome.fa.s9021.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009021.1 Hibiscus syriacus cultivar Beakdansim tig00112411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1242735

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 520 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1089--1120	16	2.0	16	100	0	64	37	18	0	43	1.51
1324--1366	19	2.3	19	83	0	50	62	2	2	32	1.20
7222--7262	2	20.5	2	100	0	82	0	48	0	51	1.00
11392--11443	20	2.6	20	96	0	95	38	26	13	21	1.90
11499--11692	20	9.6	20	76	8	76	35	25	19	19	1.95
11495--11692	40	5.0	39	81	4	200	35	26	19	19	1.95
11499--11691	60	3.2	60	83	0	251	35	25	19	19	1.95
12069--12137	33	2.2	32	89	5	104	11	21	18	47	1.80
12217--12269	20	2.6	20	87	3	70	50	16	20	11	1.76
12253--12309	14	3.7	14	75	20	60	43	22	24	8	1.81
12233--12325	33	2.8	33	90	1	132	46	23	21	8	1.79
12321--12418	19	5.7	19	70	22	81	10	24	22	42	1.84
12343--12432	14	5.7	14	74	23	81	8	25	23	42	1.83
12326--12440	33	3.5	33	95	0	212	9	24	20	45	1.81
14130--14598	183	2.6	185	98	1	899	22	12	18	46	1.83
14130--14598	93	5.1	93	96	2	885	22	12	18	46	1.83
14641--14769	19	7.3	19	75	17	125	45	28	17	8	1.77
14677--14769	33	2.8	32	91	4	150	46	27	18	7	1.76
14641--14769	52	2.5	52	74	14	140	45	28	17	8	1.77
14765--14899	19	7.6	19	75	16	128	11	19	23	45	1.82
14787--14843	14	3.7	14	77	20	60	10	21	22	45	1.82
14770--14862	33	2.8	33	95	0	168	10	20	21	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16791--16822	14	2.3	14	94	0	55	34	0	21	43	1.53
16917--17015	19	5.4	19	83	13	145	44	17	24	14	1.85
17044--17317	19	15.4	19	82	15	363	13	20	18	47	1.83
17022--17289	52	5.0	52	93	4	446	14	21	17	46	1.83
17044--17284	109	2.3	102	85	9	185	14	21	17	46	1.83
19756--19802	24	2.0	24	87	8	69	38	21	14	25	1.92
20475--20803	20	16.5	20	86	5	396	20	18	25	35	1.95
21305--21397	21	4.4	21	84	10	118	20	19	20	39	1.92
21826--22045	110	2.0	110	90	1	352	13	28	30	27	1.94
22137--22214	19	3.9	19	74	12	75	34	21	20	23	1.97
22141--22219	42	1.9	42	94	5	144	36	24	20	18	1.95
22192--22243	25	2.1	25	85	0	68	38	21	23	17	1.93
22279--22333	21	2.6	21	82	0	74	30	25	20	23	1.98
23688--23839	76	2.0	76	96	0	277	31	8	18	41	1.80
23896--23923	12	2.3	12	100	0	56	21	17	21	39	1.93
29623--29664	15	2.7	15	78	14	50	40	2	11	45	1.54
29949--29983	17	2.1	17	100	0	70	37	34	17	11	1.85
33456--33524	30	2.3	30	95	5	122	26	7	40	26	1.81
35708--35808	41	2.5	40	74	9	96	33	15	20	29	1.94
36467--36508	22	1.9	22	90	9	68	47	4	16	30	1.67
36467--36514	22	2.1	22	85	11	62	41	8	14	35	1.76
37801--37859	30	2.0	30	93	6	102	35	3	16	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37955--38026	36	2.0	36	91	0	117	23	33	27	15	1.95
37976--38005	15	2.0	15	100	0	60	26	33	26	13	1.93
37949--38028	21	4.1	21	75	18	91	22	36	27	13	1.92
38064--38103	20	2.0	20	100	0	80	15	40	30	15	1.87
38139--38181	21	2.0	21	95	0	77	23	20	27	27	1.99
38209--38248	20	1.9	22	90	10	66	37	40	10	12	1.77
38405--38474	34	2.1	32	86	5	95	31	15	30	22	1.95
41081--41139	30	2.0	30	93	6	102	35	3	16	44	1.65
41229--41294	21	3.1	21	91	4	105	21	39	27	12	1.88
41229--41294	22	3.0	22	93	2	107	21	39	27	12	1.88
41328--41371	21	2.1	21	100	0	88	13	45	27	13	1.81
41407--41449	21	2.0	21	95	0	77	23	20	27	27	1.99
41711--41780	34	2.1	32	86	5	95	31	15	30	22	1.95
43891--44121	44	5.2	44	82	2	232	28	24	19	28	1.98
57567--57607	18	2.3	18	95	4	75	21	9	26	41	1.84
57570--57620	18	3.1	17	76	18	54	23	9	23	43	1.83
74547--74644	4	24.5	4	87	0	124	0	58	0	41	0.98
74547--74644	10	9.8	10	85	0	124	0	58	0	41	0.98
74548--74636	22	4.0	22	85	5	124	0	59	0	40	0.97
74547--74646	18	5.3	19	85	9	143	0	59	0	41	0.98
75358--75471	60	1.9	59	85	1	156	42	12	9	35	1.75
75931--75977	16	3.1	15	82	17	53	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75991--76035	17	2.8	17	81	18	60	55	0	2	42	1.12
84114--84166	21	2.4	23	78	6	56	41	15	33	9	1.79
84120--84175	22	2.5	22	82	5	69	39	16	33	10	1.83
84749--84800	25	2.1	25	82	7	61	38	11	3	46	1.59
85011--85091	32	2.5	31	80	5	99	44	7	8	39	1.63
88303--88344	22	1.9	22	90	0	66	40	4	0	54	1.21
89727--89858	36	3.7	36	87	1	185	21	21	23	32	1.98
103022--103051	15	1.9	16	93	6	53	33	0	0	66	0.92
108751--108783	16	2.1	16	94	0	57	57	21	12	9	1.62
108853--108913	16	3.8	16	91	0	104	54	22	14	8	1.67
109654--109701	10	4.4	10	78	19	51	54	20	12	12	1.70
109661--109716	14	4.3	14	80	17	75	51	23	14	10	1.73
109641--109715	24	3.1	24	92	3	116	54	20	12	13	1.70
112124--112182	29	2.0	29	100	0	118	20	20	11	47	1.81
115552--115588	14	2.6	14	100	0	74	43	21	5	29	1.75
124512--124550	15	2.6	15	80	15	53	56	0	0	43	0.99
125568--125607	20	2.0	21	90	5	64	7	30	35	27	1.84
126240--126274	15	2.3	15	90	0	52	17	20	31	31	1.95
133819--133861	6	7.2	6	91	0	59	41	32	0	25	1.56
133819--133861	12	3.6	12	93	0	68	41	32	0	25	1.56
133821--133861	18	2.3	18	95	0	73	41	34	0	24	1.55
133828--133867	18	2.2	18	86	0	53	42	37	2	17	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134407--134480	21	3.5	21	88	0	121	25	14	25	33	1.94
140432--140467	16	2.2	16	90	0	54	41	27	8	22	1.82
142445--142502	24	2.4	23	81	16	64	62	5	3	29	1.33
142794--143120	43	7.4	43	68	17	127	23	19	32	23	1.97
142824--143033	40	4.9	41	68	18	124	23	19	34	22	1.96
142683--143120	134	3.3	134	92	1	680	24	18	31	24	1.98
143147--143242	28	3.3	28	83	12	106	44	13	15	26	1.83
143244--143426	66	2.8	63	72	8	152	38	15	20	26	1.92
143835--143914	40	2.0	40	100	0	160	35	12	22	30	1.91
143896--144020	64	2.0	64	85	1	171	43	9	14	32	1.78
144181--144393	67	3.3	64	84	8	191	44	13	12	29	1.80
144242--144432	67	3.0	65	88	6	273	42	13	12	30	1.81
144382--144485	52	2.0	53	94	1	183	37	16	13	32	1.87
144477--144663	27	6.5	30	83	6	160	44	14	10	29	1.79
144546--144652	27	3.9	27	95	2	178	43	15	13	27	1.84
144496--144652	54	2.8	56	85	5	194	43	15	10	29	1.80
144902--145005	36	3.0	36	81	4	124	35	11	20	32	1.88
144903--145021	36	3.4	36	79	6	111	36	12	21	30	1.90
144973--145205	105	2.2	104	84	6	287	37	12	19	30	1.89
145670--145711	4	11.0	4	90	10	70	23	0	26	50	1.50
146891--146928	11	3.4	11	89	7	58	5	13	10	71	1.30
146886--146933	12	3.9	12	81	8	53	4	12	12	70	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150642--150678	16	2.3	16	95	0	65	37	27	13	21	1.91
150877--150916	4	10.0	4	100	0	80	75	0	0	25	0.81
152661--152722	3	20.7	3	74	12	56	62	3	3	30	1.26
152661--152724	24	2.7	23	83	11	76	64	3	3	29	1.24
155577--155610	17	2.0	17	88	0	50	20	8	23	47	1.78
158904--158942	2	19.5	2	100	0	78	48	0	0	51	1.00
159908--160089	14	12.4	14	80	9	116	34	0	18	46	1.49
159911--160090	4	46.5	4	85	6	156	34	0	18	46	1.50
159925--159979	2	27.5	2	88	0	83	43	0	5	50	1.25
163175--163236	18	3.5	17	78	6	61	67	0	8	24	1.17

Tables:   1   2   3   4   5