Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009021.1 Hibiscus syriacus cultivar Beakdansim tig00112411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1242735

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 520 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1097200--1097459
85
3.1
83
83
5
324
28
15
20
35
1.93
1098427--1098513
32
2.7
32
87
0
84
33
22
13
29
1.93
1099289--1099336
20
2.4
20
100
0
96
41
27
4
27
1.74
1100422--1100456
16
2.1
17
89
5
54
20
45
22
11
1.82
1100478--1100586
30
3.7
30
85
6
134
33
6
19
40
1.77
1107548--1107696
29
5.2
29
82
8
162
32
5
20
41
1.75
1107548--1107724
57
3.1
57
78
9
171
33
5
19
41
1.75
1109169--1109206
20
2.0
19
90
10
60
21
26
18
34
1.96
1111060--1111097
19
2.1
19
85
14
53
7
7
7
76
1.17
1111924--1111957
16
2.0
18
88
11
54
64
8
11
14
1.49
1113085--1113114
15
2.0
15
93
0
51
73
3
13
10
1.21
1115116--1115161
17
2.7
17
96
0
83
21
0
50
28
1.49
1121378--1121441
30
2.1
30
91
0
101
34
10
10
43
1.75
1123578--1123635
2
29.0
2
100
0
116
50
0
0
50
1.00
1140018--1140051
18
1.9
17
88
5
50
29
0
5
64
1.17
1147964--1147997
18
1.9
17
88
5
50
29
0
5
64
1.17
1169260--1169304
9
4.7
10
83
10
67
24
40
24
11
1.87
1169254--1169305
19
2.8
18
88
8
70
25
38
25
11
1.89
1169287--1169375
33
2.7
33
89
0
133
25
26
37
10
1.88
1169421--1169452
13
2.5
13
94
0
55
6
25
43
25
1.77
1179331--1179688
178
2.0
179
99
0
709
35
13
18
31
1.90
1184921--1184947
2
13.5
2
100
0
54
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1185906--1186013
53
2.0
54
90
1
173
35
3
15
45
1.64
1192989--1193034
15
3.1
15
78
6
58
45
8
15
30
1.76
1193264--1193326
32
1.9
32
84
9
83
44
0
3
52
1.17
1193326--1193373
20
2.4
21
79
10
55
45
0
4
50
1.21
1193405--1193583
28
6.1
28
69
17
89
50
2
0
46
1.17
1193528--1193589
21
2.9
22
79
9
67
58
0
0
41
0.98
1193521--1193591
30
2.2
32
78
16
85
53
0
0
46
1.00
1200041--1200116
33
2.3
32
82
6
98
46
30
7
15
1.75
1200656--1200696
22
1.9
21
85
5
55
70
4
0
24
1.06
1203490--1203518
12
2.4
12
100
0
58
34
58
0
6
1.25
1224028--1224094
27
2.5
27
90
0
116
38
17
16
26
1.91
1227805--1227912
42
2.6
42
82
2
130
18
14
18
48
1.82
1228202--1228345
28
5.0
28
67
24
70
51
2
1
45
1.21
1228200--1228249
19
2.7
19
78
9
50
56
0
2
42
1.11
1228119--1228286
57
2.9
56
73
19
139
50
1
1
46
1.19
1228640--1228683
21
2.1
21
91
0
70
31
13
4
50
1.62
1230303--1230346
16
2.8
16
92
0
79
56
22
11
9
1.62
1242104--1242154
22
2.3
22
83
10
59
39
3
0
56
1.18

Tables:   1   2   3   4   5

The End!