genome.fa.s9022.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009022.1 Hibiscus syriacus cultivar Beakdansim tig00112415_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81596

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177--220	18	2.4	19	80	7	54	47	2	6	43	1.42
494--555	23	2.6	23	82	5	61	22	8	20	48	1.76
1375--1550	88	2.0	88	98	0	343	31	21	12	34	1.91
3251--3435	96	2.0	93	91	5	300	34	9	24	31	1.87
3446--3506	26	2.2	28	82	5	72	47	8	1	42	1.43
3463--3548	41	2.1	41	89	4	129	45	9	0	45	1.35
7965--8128	84	1.9	85	83	3	215	29	17	20	32	1.96
7972--8176	84	2.4	84	79	5	189	27	19	20	31	1.97
13768--13801	17	2.0	17	88	0	50	47	0	0	52	1.00
16725--16768	22	2.0	22	91	8	72	31	31	27	9	1.88
22070--22128	22	2.7	22	100	0	118	20	27	30	22	1.98
31330--31359	4	7.5	4	100	0	60	23	0	0	76	0.78
32491--32588	21	4.8	20	75	10	81	37	23	18	20	1.94
32555--32824	20	13.5	20	81	6	269	37	25	17	20	1.94
33947--34105	32	4.7	34	73	17	116	45	18	20	15	1.85
33947--34114	53	3.2	52	91	5	261	44	18	21	15	1.86
33947--34114	19	9.7	19	74	20	163	44	18	21	15	1.86
34123--34220	19	5.4	19	84	13	143	14	22	17	45	1.84
34104--34220	53	2.2	53	96	1	218	13	24	17	43	1.86
34327--34363	14	2.6	14	91	0	65	45	21	0	32	1.52
36338--36394	14	3.7	14	77	20	60	45	22	21	10	1.82
36319--36411	33	2.8	33	95	0	168	47	21	20	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36282--36416	19	7.6	19	76	16	128	45	23	19	11	1.82
36412--36540	19	7.3	19	75	17	125	8	17	28	45	1.77
36412--36503	33	2.8	33	93	3	150	7	18	28	45	1.76
36587--37148	93	6.1	93	98	0	1081	45	18	12	22	1.83
38847--38936	14	5.7	14	72	23	72	44	22	24	8	1.81
38839--38952	33	3.5	33	98	1	221	46	20	23	9	1.80
38861--38957	14	5.7	19	70	23	90	44	21	23	10	1.83
38964--39033	33	2.1	33	91	0	113	12	21	18	47	1.82
39009--39086	41	1.9	41	97	0	147	12	25	16	44	1.83
39010--39085	21	3.7	21	83	3	109	11	25	17	46	1.82
39164--39234	33	2.2	33	92	0	115	47	18	22	11	1.80
39416--39470	22	2.5	22	81	0	74	20	16	40	23	1.91
39617--39770	20	7.7	20	81	7	168	18	18	26	37	1.93
39616--39770	40	3.8	40	82	4	186	18	18	26	37	1.93
40831--40882	22	2.4	22	96	0	95	11	13	34	40	1.81
41351--41390	20	2.0	20	85	9	55	65	5	0	30	1.14
43490--43515	13	2.0	13	100	0	52	30	30	7	30	1.85
59344--59439	30	3.4	28	78	14	90	50	6	5	38	1.50
59363--59439	26	2.8	27	82	13	95	49	6	3	40	1.47
63554--63582	2	14.5	2	100	0	58	51	0	0	48	1.00
67202--67246	21	2.1	21	91	0	72	64	0	0	35	0.94
68287--68319	17	1.9	17	93	0	57	48	6	0	45	1.27

Tables:   1

The End!