genome.fa.s9029.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009029.1 Hibiscus syriacus cultivar Beakdansim tig00112429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  496945

Tables:   1   2   3   

This is table  2  of  3  ( 252 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167689--167954	4	66.5	4	100	0	532	25	0	24	50	1.50
169131--169168	11	3.4	11	89	7	58	5	13	10	71	1.30
169126--169173	12	3.9	12	81	8	53	4	12	12	70	1.29
169828--169868	20	2.0	20	90	0	64	39	12	19	29	1.88
169800--169879	26	3.3	24	72	21	78	38	10	23	27	1.87
169786--169879	46	2.1	45	85	2	125	36	9	25	28	1.87
174737--174782	3	15.3	3	90	0	74	65	2	2	30	1.16
176457--176487	2	15.5	2	100	0	62	48	0	0	51	1.00
176619--176762	50	2.9	51	80	5	168	25	11	15	46	1.80
177514--177556	20	2.3	18	80	11	50	25	25	4	44	1.73
179416--179463	15	3.1	16	76	11	55	37	0	2	60	1.09
179472--179512	17	2.5	17	81	18	52	60	0	0	39	0.96
181021--181048	11	2.5	11	100	0	56	7	67	17	7	1.37
185052--185093	22	1.9	22	100	0	84	42	4	14	38	1.66
187222--187264	15	2.8	16	85	3	52	69	6	9	13	1.35
187633--187718	24	3.6	24	82	3	102	58	22	13	5	1.57
187976--188007	14	2.1	16	88	11	50	50	18	15	15	1.79
192260--192321	31	2.0	31	96	0	115	22	14	38	24	1.91
195986--196129	30	5.0	30	70	12	97	25	21	6	47	1.74
196241--196372	49	2.7	50	84	2	178	36	25	13	24	1.92
196435--196539	52	2.0	52	84	0	138	42	20	2	33	1.67
201536--201891	160	2.2	160	86	0	514	48	5	17	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205987--206018	15	2.1	15	94	0	55	6	25	15	53	1.65
209001--210341	669	2.0	669	97	0	2506	30	21	15	31	1.95
218656--218774	35	3.3	36	88	5	161	44	16	5	33	1.70
218707--218766	21	3.2	20	65	30	51	43	18	5	33	1.72
223256--223373	35	3.3	37	85	8	163	44	16	3	34	1.65
224363--224488	60	2.1	61	80	2	139	32	16	19	30	1.94
233207--233245	2	19.5	2	100	0	78	51	0	0	48	1.00
241084--241146	28	2.2	28	97	0	117	34	9	9	46	1.69
244278--244324	24	2.0	24	100	0	94	51	6	12	29	1.65
248107--248144	20	1.9	20	88	0	58	36	0	0	63	0.95
248514--248550	20	1.9	19	89	10	58	45	10	24	18	1.81
258386--258428	16	2.5	18	78	21	56	37	0	2	60	1.10
260433--260504	35	2.0	37	94	5	130	30	11	13	44	1.79
260441--260498	17	3.4	17	69	21	57	29	10	15	44	1.79
263731--263778	21	2.3	21	88	0	69	10	14	43	31	1.79
277605--277636	15	2.1	15	94	0	55	34	0	0	65	0.93
290997--291085	46	2.0	45	86	6	126	30	17	24	26	1.98
292170--292213	21	2.1	21	86	0	61	38	15	38	6	1.75
300031--300106	37	2.1	37	92	0	125	35	19	21	23	1.96
306209--306466	128	2.0	127	99	0	507	40	7	16	35	1.77
307901--308014	60	1.9	60	81	0	138	39	16	10	33	1.83
311053--311085	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314801--315320	30	17.3	30	99	0	1013	30	23	22	23	1.99
315303--315398	31	3.1	30	75	10	95	33	20	18	27	1.96
315749--315783	2	18.0	2	94	5	63	51	0	0	48	1.00
319642--320221	30	19.3	30	99	0	1142	30	23	23	23	1.99
320204--320299	31	3.1	30	75	10	95	33	20	18	27	1.96
322169--322218	23	2.2	22	83	13	66	54	8	20	18	1.68
323315--323373	29	2.0	29	83	6	73	37	6	20	35	1.79
327292--327367	40	2.0	38	82	10	93	50	11	13	25	1.75
327554--327601	16	3.1	16	74	17	55	25	10	6	58	1.54
328091--328126	11	3.0	13	80	19	51	27	5	0	66	1.13
328091--328134	21	2.0	22	82	8	54	31	4	0	63	1.14
331102--331226	45	2.9	44	73	16	118	42	2	1	53	1.23
331027--331172	75	1.9	75	83	5	188	39	4	2	53	1.34
331116--331210	39	2.4	39	84	3	120	41	3	2	53	1.28
331162--331204	18	2.6	16	85	7	50	41	0	2	55	1.12
331217--331254	17	2.1	19	90	9	62	52	0	10	36	1.36
334698--334755	17	3.1	19	82	12	75	41	1	1	55	1.20
335186--335238	25	2.1	25	83	13	65	56	0	0	43	0.99
335194--335244	25	2.0	25	81	7	59	60	0	0	39	0.97
343462--343495	17	2.0	17	100	0	68	52	5	0	41	1.25
346448--346482	17	2.1	17	100	0	70	34	5	31	28	1.81
356402--356436	16	2.2	16	100	0	70	20	5	37	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357921--358043	64	1.9	64	86	3	176	42	13	10	34	1.78
359992--360068	23	3.3	23	74	13	68	46	19	18	15	1.84
359988--360082	46	2.1	45	78	5	102	50	18	15	14	1.78
360093--360121	12	2.3	13	94	5	51	82	0	10	6	0.83
360809--360848	21	2.0	20	85	5	53	55	12	20	12	1.69
363981--364036	14	4.0	14	97	0	103	23	42	26	7	1.79
364131--364218	10	8.5	10	72	7	68	9	31	32	26	1.87
364131--364218	20	4.2	20	83	8	104	9	31	32	26	1.87
366753--366896	56	2.6	56	87	4	202	27	15	14	43	1.85
368461--368514	20	2.7	19	75	8	63	33	29	18	18	1.95
368501--368596	21	4.7	20	70	15	70	36	20	19	22	1.95
368564--368778	20	10.6	20	79	5	209	38	24	18	18	1.93
368564--368775	40	5.2	40	86	2	273	38	24	18	18	1.93
368564--368778	101	2.1	101	82	5	265	38	24	18	18	1.93
369347--369410	20	3.2	20	79	2	74	51	20	15	12	1.75
369428--369516	20	4.8	20	73	18	77	11	23	19	46	1.82
371548--372144	296	2.0	296	98	0	1140	31	22	17	28	1.96
373115--373168	24	2.2	24	90	0	81	42	18	18	20	1.89
374014--374273	20	12.9	19	72	13	141	20	18	23	37	1.94
374020--374311	40	7.2	40	83	6	295	19	18	23	38	1.93
374020--374311	60	4.8	59	79	7	257	19	18	23	38	1.93
374259--374311	20	2.7	20	91	5	81	13	18	24	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374361--374414	20	2.7	19	69	8	54	16	16	31	35	1.92
386229--386529	150	2.0	151	94	0	532	35	15	11	37	1.85
387852--387904	26	2.0	26	100	0	106	26	32	22	18	1.97
388044--388116	2	36.5	2	100	0	146	50	0	0	49	1.00
388194--388244	16	3.2	16	78	10	59	50	29	11	7	1.67
391506--391593	29	3.0	29	100	0	176	23	13	13	48	1.78
396216--396274	29	2.0	29	100	0	118	23	13	13	49	1.78
398164--398205	21	2.0	21	95	0	75	26	28	21	23	1.99
398333--398394	21	3.0	21	90	4	99	14	29	37	19	1.91
411349--411413	30	2.2	30	86	5	87	30	18	9	41	1.82
417718--417783	30	2.2	30	81	10	73	31	19	7	40	1.80
417730--417787	30	1.9	30	86	6	82	34	17	8	39	1.80
424689--424833	58	2.5	60	77	8	145	35	17	12	33	1.88
425849--425921	22	3.3	22	92	0	119	38	12	21	27	1.89
430146--430184	20	2.0	20	100	0	78	20	20	15	43	1.88
437419--437488	23	3.0	23	79	10	88	25	24	24	25	2.00
439912--439966	14	3.9	14	82	0	65	23	0	30	45	1.53
440040--440110	7	10.3	7	78	3	63	18	1	30	49	1.56
440075--440110	13	2.6	14	86	8	56	16	0	36	47	1.47
441488--442022	45	11.9	45	92	1	777	17	22	36	23	1.95
443534--443779	126	1.9	126	88	1	366	29	16	15	38	1.90
444706--444752	18	2.4	20	79	10	53	55	2	23	19	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444987--445064	36	2.2	36	90	4	122	25	25	30	17	1.97
446665--446693	12	2.3	13	94	5	51	0	10	6	82	0.83
457594--457764	86	2.0	86	98	0	333	46	8	6	39	1.59
462558--462629	36	2.0	36	91	2	119	19	16	19	44	1.87
465368--465406	21	1.9	20	84	5	51	25	12	20	41	1.88
466121--466228	39	2.8	39	78	5	112	21	19	24	35	1.96
467589--467671	36	2.3	37	85	6	116	38	10	32	18	1.85
470497--470521	2	12.5	2	100	0	50	52	0	0	48	1.00
473966--473999	12	2.7	13	86	9	52	41	0	5	52	1.25
474440--474497	16	3.6	16	82	13	75	48	3	0	48	1.18

Tables:   1   2   3