genome.fa.s9039.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009039.1 Hibiscus syriacus cultivar Beakdansim tig00112446_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125775

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4733--4814	23	3.7	22	79	10	87	24	29	25	20	1.99
4733--4816	22	3.8	23	74	12	77	23	29	25	21	1.99
6361--6401	18	2.3	18	91	8	66	43	21	34	0	1.53
12584--13206	312	2.0	311	86	4	878	39	18	14	26	1.90
13480--13512	13	2.5	13	85	14	50	27	0	12	60	1.32
29937--30001	31	2.1	31	97	0	121	21	16	33	27	1.95
30962--31187	33	6.8	33	84	2	256	25	27	16	30	1.97
33330--33376	21	2.4	19	79	13	51	29	19	17	34	1.94
36165--36197	16	2.1	16	94	0	57	33	9	33	24	1.87
39165--39202	14	2.6	15	83	8	51	34	28	13	23	1.92
45795--45829	14	2.5	14	90	0	52	34	40	14	11	1.82
46217--46254	3	12.7	3	88	0	58	31	28	36	2	1.71
50698--50741	20	2.2	21	84	8	56	29	2	4	63	1.26
52090--52124	18	2.1	16	89	10	52	51	0	5	42	1.25
52994--53179	51	3.7	51	90	4	288	16	5	45	32	1.71
52997--53158	48	3.3	48	92	5	270	14	5	46	32	1.68
52996--53225	99	2.3	99	83	7	263	18	6	43	31	1.74
53098--53564	129	3.6	125	93	1	664	19	7	41	31	1.79
52869--53290	234	1.8	234	86	1	621	18	6	43	31	1.76
53234--53564	45	7.6	44	68	18	185	18	7	41	32	1.79
52869--53338	234	2.0	234	83	4	599	18	7	43	30	1.77
55232--55265	17	2.0	17	100	0	68	29	0	5	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55745--55855	37	2.8	41	66	25	103	52	6	7	34	1.54
62149--62516	20	18.5	20	84	5	449	34	26	19	20	1.96
63187--63233	24	2.0	24	87	8	69	25	14	21	38	1.92
63408--63432	12	2.1	12	100	0	50	72	0	28	0	0.86
65333--65389	14	3.7	14	77	20	60	45	22	21	10	1.82
65314--65406	33	2.8	33	95	0	168	47	21	20	10	1.80
65294--65411	19	6.7	19	77	18	121	46	22	20	10	1.80
65407--65535	19	7.3	19	75	17	125	8	17	28	45	1.77
65407--65498	33	2.8	33	93	3	150	7	18	28	45	1.76
65579--65955	93	4.1	93	96	2	717	46	18	12	22	1.83
65579--65955	182	2.0	185	97	2	724	46	18	12	22	1.83
67657--67746	14	5.7	14	74	23	81	42	23	25	8	1.83
67649--67763	33	3.5	33	95	0	212	45	20	24	9	1.81
67656--67768	19	6.8	18	72	23	88	43	22	24	9	1.83
67780--67834	14	3.6	14	73	21	56	9	25	23	41	1.83
67764--67834	33	2.2	33	94	0	124	8	22	25	43	1.81
67775--67856	33	2.5	33	89	2	119	9	25	21	42	1.84
67787--67875	20	4.8	20	72	19	75	12	24	19	43	1.85
67955--68024	33	2.2	32	89	2	104	47	18	22	11	1.81
68403--68596	20	9.6	20	82	5	221	19	19	25	35	1.95
68403--68596	60	3.2	60	83	0	253	19	19	25	35	1.95
68589--68665	21	3.7	20	70	13	57	27	16	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68651--68702	20	2.6	20	96	0	95	21	13	26	38	1.90
72855--72908	23	2.3	23	100	0	108	25	7	25	40	1.82
79538--79603	24	2.8	24	88	0	105	24	16	25	33	1.96
83300--83335	17	2.3	15	90	9	54	69	0	2	27	1.02
84566--84664	24	4.4	23	73	17	91	40	5	5	49	1.47
84566--84652	42	2.1	41	89	6	131	42	4	4	48	1.44
84590--84627	16	2.2	17	90	9	60	39	2	5	52	1.38
84585--84628	18	2.4	19	77	11	56	40	4	4	50	1.43
84563--84687	66	1.9	66	85	3	171	41	8	4	46	1.52
84738--84764	14	1.9	14	100	0	54	40	7	7	44	1.60
84686--84858	38	4.7	37	73	13	142	43	8	3	44	1.52
84831--84882	22	2.2	24	83	13	63	38	13	1	46	1.54
88341--88382	20	2.2	20	91	4	68	38	0	2	59	1.10
91550--91584	18	2.0	18	88	5	54	17	5	5	71	1.25
92218--92293	36	2.1	36	97	0	143	43	14	10	31	1.79
96767--96796	15	2.0	15	100	0	60	13	46	26	13	1.80
97217--97292	36	2.1	36	97	0	143	43	14	10	31	1.79
102157--102190	16	2.1	16	88	0	50	11	0	11	76	1.02
106550--106649	13	7.8	13	76	16	77	75	8	16	1	1.09
106550--106665	27	4.5	25	74	19	96	74	8	15	1	1.14
106570--106663	27	3.5	26	83	11	102	72	8	17	2	1.19
106640--106694	18	3.0	19	84	10	62	70	10	16	1	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107806--107910	28	3.7	27	75	13	86	28	11	16	43	1.82
107904--108032	63	2.0	64	86	5	181	31	12	12	43	1.80
107949--108127	96	1.9	96	82	4	227	31	13	10	44	1.78
108493--108629	37	3.7	37	86	7	172	35	16	12	35	1.87
108774--109089	133	2.4	133	84	5	422	26	30	17	25	1.97
110846--110878	4	8.2	4	93	0	57	24	0	3	72	0.98
110993--111030	4	9.8	4	85	5	51	18	0	2	78	0.86
110990--111030	20	2.1	19	90	4	64	17	0	4	78	0.93
110807--111115	148	2.1	146	85	2	422	22	15	13	48	1.80
121582--121788	39	5.3	38	83	6	211	16	27	23	32	1.96
121608--121788	78	2.3	78	84	0	245	15	27	23	33	1.95
122655--122704	21	2.4	21	89	0	73	36	12	34	18	1.87

Tables:   1

The End!