genome.fa.s9040.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009040.1 Hibiscus syriacus cultivar Beakdansim tig00112448_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106360

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151--202	22	2.4	22	86	0	68	28	19	11	40	1.86
214--253	19	2.0	20	85	4	55	45	17	5	32	1.70
6393--6771	131	2.9	131	81	2	406	36	8	14	40	1.78
16501--16549	14	3.5	14	82	0	62	30	28	14	26	1.95
20423--20682	134	1.9	135	83	2	335	30	20	19	29	1.97
20466--20722	134	1.9	131	81	4	300	31	19	17	30	1.95
20960--21010	12	4.2	12	77	5	57	23	3	0	72	1.01
21966--22201	109	2.2	109	84	5	307	18	13	19	48	1.81
22542--22591	24	2.1	24	85	7	66	14	6	12	68	1.39
23043--23430	131	3.0	130	84	4	451	33	9	16	40	1.80
24390--24428	20	2.0	20	94	0	69	53	20	7	17	1.68
34737--34856	28	3.9	30	72	16	84	46	7	9	36	1.64
34760--34856	30	3.2	29	75	16	99	44	7	8	40	1.62
38747--38777	11	2.8	11	95	0	53	35	12	0	51	1.40
41095--41126	3	10.7	3	93	0	55	3	34	0	62	1.11
42415--42570	31	5.0	31	96	1	278	19	19	23	38	1.93
47866--47958	42	2.2	41	96	1	168	9	12	9	67	1.41
53714--53818	28	3.6	27	75	13	93	39	4	12	43	1.63
56114--56156	20	2.2	20	91	0	68	34	4	6	53	1.49
56116--56163	20	2.6	18	81	15	53	37	4	6	52	1.46
61480--61509	15	2.0	15	100	0	60	60	0	20	20	1.37
61483--61517	15	2.3	15	90	0	52	65	0	17	17	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61524--61616	26	3.5	26	74	11	66	70	2	8	18	1.22
61628--61733	4	26.8	4	71	16	51	69	0	2	26	1.08
61628--61703	21	3.6	20	75	18	57	73	1	2	22	1.03
61640--61719	36	2.3	34	83	12	92	71	1	2	25	1.06
61662--61734	30	2.5	30	84	10	89	68	0	2	28	1.03
61651--61726	34	2.2	36	90	9	122	68	0	2	28	1.03
61770--61832	22	2.9	23	78	17	73	68	4	4	22	1.28
62146--62214	34	2.0	34	94	0	120	31	14	11	42	1.82
62676--63305	109	5.9	107	82	5	563	21	19	25	32	1.97
62834--63305	109	4.4	108	86	3	569	21	19	26	32	1.97
62676--63305	218	3.0	213	81	6	620	21	19	25	32	1.97
63905--64042	67	2.1	67	91	0	222	35	13	21	30	1.91
63917--64393	36	13.9	36	65	17	228	37	12	20	28	1.90
64095--64393	37	8.6	37	66	19	160	38	13	20	27	1.90
63917--64375	102	4.5	102	89	0	659	37	12	21	28	1.90
65253--65329	22	3.5	22	100	0	154	23	12	27	36	1.91
65980--66050	8	9.0	7	74	19	52	0	15	7	77	0.97
65974--66019	16	2.8	17	80	6	51	0	17	8	73	1.07
69108--69234	13	9.9	13	70	18	54	75	0	5	18	1.04
69159--69223	23	3.0	20	73	24	51	75	1	1	21	0.97
69113--69223	45	2.4	45	81	8	111	76	0	5	17	1.02
69171--69217	19	2.5	20	83	16	64	74	0	2	23	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69167--69234	28	2.4	28	80	14	77	73	0	2	23	0.97
69107--69218	9	11.8	9	70	12	55	75	0	5	17	1.03
69171--69244	35	2.0	38	87	10	109	70	0	2	27	1.01
69293--69360	23	2.9	23	82	10	68	69	4	4	22	1.25
69678--69746	34	2.0	34	94	0	120	31	14	11	42	1.82
73160--73202	20	2.2	20	86	0	59	34	2	6	55	1.39
75031--75146	3	38.7	3	83	10	121	57	0	0	40	1.10
75031--75135	33	3.3	32	85	7	144	58	0	0	40	1.05
75865--75910	22	2.1	22	100	0	92	39	13	13	34	1.83
76889--76978	46	2.0	46	95	0	162	31	18	24	25	1.98
77310--77407	44	2.2	46	85	3	128	23	22	21	32	1.98
78088--78136	5	9.8	5	93	0	62	6	40	36	16	1.73
78134--78176	6	7.2	6	94	0	68	4	16	48	30	1.66
78451--78505	22	2.5	22	75	0	56	29	9	23	38	1.85
84038--84081	5	8.8	5	92	0	52	6	40	36	15	1.74
84079--84151	6	12.2	6	97	0	119	4	16	49	30	1.64
84426--84480	22	2.5	22	75	0	56	29	9	23	38	1.85
85894--85933	17	2.4	17	95	0	71	42	15	22	20	1.88
87939--87966	12	2.3	12	100	0	56	39	0	21	39	1.54
89159--89220	21	2.9	22	83	13	76	12	8	19	59	1.58
91239--91273	18	2.0	17	88	5	52	40	0	0	60	0.97
92448--92516	24	2.9	24	86	0	93	24	4	17	53	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92438--92523	24	3.6	23	75	17	77	27	5	16	50	1.68
100753--100783	15	2.1	15	93	0	53	25	9	41	22	1.84
101298--101357	13	4.5	13	72	14	50	76	1	0	21	0.87
101298--101367	16	4.6	15	74	16	56	77	2	0	20	0.90
101301--101366	23	3.0	23	75	20	68	77	3	0	19	0.90
101298--101368	20	3.5	20	75	21	60	77	2	0	19	0.89
101377--101509	36	3.6	36	67	23	87	70	3	7	18	1.24
102668--102708	13	3.1	13	89	3	64	68	0	2	29	1.03
102653--102705	10	4.9	10	80	15	61	67	0	5	26	1.12
102740--102830	32	3.0	30	80	7	85	43	4	5	46	1.46
102795--103021	36	6.2	37	78	15	210	44	5	4	45	1.49
102765--103006	107	2.3	105	82	13	307	43	5	4	45	1.49
102816--103022	38	5.7	36	78	16	166	43	5	4	46	1.47
103046--103110	2	32.5	2	93	0	112	47	1	0	50	1.10

Tables:   1

The End!