genome.fa.s9073.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009073.1 Hibiscus syriacus cultivar Beakdansim tig00112505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  329414

Tables:   1   2   

This is table  1  of  2  ( 166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4839--4869	14	2.2	14	94	0	53	38	0	12	48	1.42
7744--7789	22	2.1	22	88	8	67	32	13	15	39	1.85
8985--9040	22	2.4	24	77	17	64	57	0	30	12	1.36
12112--12143	17	1.9	16	93	6	55	56	0	3	40	1.15
12109--12144	16	2.2	16	86	13	56	58	0	2	38	1.13
12193--12260	17	3.6	18	86	11	84	70	0	1	27	0.96
12217--12270	18	3.1	17	86	5	72	64	0	0	35	0.94
12779--12811	13	2.5	13	100	0	66	18	21	39	21	1.93
13679--13869	4	48.8	4	70	18	50	73	1	4	20	1.08
13746--13827	23	3.6	23	82	11	89	75	1	3	19	1.02
13764--13873	13	8.5	12	69	12	60	77	0	0	20	0.88
13767--13928	42	4.1	39	79	14	154	69	0	1	27	1.03
13767--13926	40	4.1	41	79	13	151	70	0	1	27	1.03
13769--13922	38	4.0	37	79	10	139	70	0	1	26	1.02
13912--13945	2	17.0	2	100	0	68	50	0	0	50	1.00
13947--13999	22	2.3	24	81	12	58	71	3	7	16	1.24
15174--15213	21	1.9	21	100	0	80	45	15	20	20	1.86
15312--15394	36	2.3	36	85	0	103	39	14	20	25	1.90
15288--15545	102	2.5	102	89	1	383	37	13	18	30	1.89
15777--16099	106	3.0	106	86	1	434	22	18	23	34	1.96
16676--16769	31	2.9	32	82	4	127	39	18	11	30	1.86
17703--17840	69	2.0	69	88	0	204	26	13	21	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17903--17963	21	2.9	21	80	4	61	4	16	3	75	1.11
20992--21145	23	6.5	22	67	21	62	72	1	6	19	1.17
21070--21145	28	2.6	27	77	10	71	77	1	2	18	0.95
21071--21136	18	3.6	17	76	11	69	77	1	3	18	0.98
21155--21219	2	33.0	2	83	9	53	60	0	1	38	1.07
21133--21258	43	2.8	42	84	11	146	63	0	2	33	1.13
21073--21258	49	3.9	48	78	10	150	67	1	2	28	1.11
21238--21294	26	2.3	24	84	6	69	68	1	1	28	1.09
23884--23909	6	4.3	6	100	0	52	15	0	53	30	1.42
23884--23918	18	1.9	18	88	0	52	14	5	51	28	1.65
26034--26162	59	2.1	61	86	8	176	41	6	20	31	1.79
33494--33565	21	3.5	21	72	14	69	30	19	20	29	1.97
38198--38289	30	3.1	29	71	20	82	40	15	3	41	1.63
41196--41274	32	2.5	32	85	0	95	31	12	13	41	1.82
41479--41530	26	2.0	26	96	0	95	48	11	17	23	1.79
61669--61838	60	2.8	60	86	1	234	22	13	22	41	1.89
66946--67011	18	3.7	18	78	10	73	45	10	12	31	1.76
66950--67022	17	4.2	18	80	5	60	47	10	9	31	1.71
70996--71167	60	2.9	60	86	0	247	23	16	21	37	1.93
75527--75552	2	13.0	2	100	0	52	50	0	0	50	1.00
77041--77646	111	5.5	110	81	6	688	28	15	24	31	1.96
77039--77647	220	2.8	221	81	6	730	28	15	24	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79787--79824	20	1.9	20	84	10	51	18	21	0	60	1.36
91359--91405	2	23.5	2	100	0	94	51	48	0	0	1.00
91405--91442	2	19.0	2	100	0	76	50	0	0	50	1.00
91761--91817	2	29.0	2	96	3	107	50	0	0	49	1.00
92723--92757	17	2.2	16	90	10	54	5	11	5	77	1.12
92892--92944	24	2.2	24	96	0	97	20	20	33	24	1.97
94147--94204	29	2.0	29	86	0	80	8	29	1	60	1.36
101994--102063	35	2.0	35	100	0	140	34	25	17	22	1.96
106240--106271	2	16.5	2	93	6	57	53	0	0	46	1.00
106293--106340	18	2.8	17	87	9	71	45	6	2	45	1.40
106292--106408	13	7.9	15	68	16	57	49	5	4	40	1.47
106435--106476	2	21.5	2	95	4	77	50	0	0	50	1.00
106576--106629	19	2.9	18	86	8	56	40	0	33	25	1.56
106586--106629	20	2.2	20	92	4	72	40	0	36	22	1.54
106847--106879	15	2.1	16	94	5	59	45	6	6	42	1.53
106911--107007	8	11.7	9	79	17	72	47	3	6	43	1.44
106951--107006	2	28.5	2	96	3	105	50	0	0	50	1.00
107060--107124	21	3.1	21	77	0	58	49	30	1	18	1.57
107060--107120	14	4.4	14	72	15	54	49	31	1	18	1.57
107467--107540	2	37.0	2	81	10	89	48	1	4	45	1.29
108529--108586	22	2.4	25	86	11	86	39	3	1	55	1.27
108580--108638	20	2.8	21	82	7	66	47	5	5	42	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108605--108644	2	20.0	2	85	10	55	50	2	0	47	1.14
108605--108661	27	2.0	27	86	6	78	52	3	1	42	1.28
108950--108996	14	3.7	14	71	26	50	51	4	0	44	1.21
108948--108997	23	2.1	24	96	3	93	48	4	0	48	1.20
109238--109287	16	3.1	16	100	0	100	36	14	30	20	1.91
109923--109973	22	2.3	23	82	6	68	27	17	3	50	1.63
118550--118581	10	3.1	11	86	13	50	75	0	6	18	1.01
128710--128787	20	4.0	20	78	8	70	33	29	12	24	1.92
128747--128803	20	2.8	20	86	0	69	33	28	8	29	1.87
130937--131053	60	2.0	60	84	0	153	24	38	16	20	1.92
131168--131217	21	2.4	21	93	0	82	18	14	32	36	1.90
131234--131330	42	2.3	43	75	8	110	20	10	34	35	1.87
131290--131335	21	2.2	21	88	0	65	17	15	30	36	1.91
131302--131343	21	2.0	21	85	0	57	16	16	33	33	1.92
131625--131755	21	6.2	21	74	8	97	22	38	13	25	1.91
133585--133620	18	2.0	18	88	0	54	16	5	22	55	1.62
135782--135847	24	2.8	24	90	0	96	39	19	18	22	1.92
136548--136586	15	2.5	15	83	4	51	66	0	5	28	1.12
136763--136973	40	5.3	40	81	8	234	35	15	23	26	1.94
136763--136993	20	11.5	20	69	8	94	34	15	23	26	1.94
136743--136992	80	3.1	78	77	10	229	35	14	22	27	1.94
136874--136993	21	5.9	19	77	9	105	35	14	25	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136796--136993	60	3.3	59	73	6	173	34	14	23	27	1.94
137058--137107	20	2.5	20	87	6	66	32	10	26	32	1.89
137100--137149	19	2.5	20	87	3	66	22	12	30	36	1.90
138998--139136	53	2.6	53	81	4	138	25	15	13	44	1.84
142514--142549	17	2.1	17	100	0	72	27	16	22	33	1.95
143994--144103	37	3.0	37	90	0	166	41	11	16	30	1.84
144648--144799	39	3.9	37	75	18	116	27	2	3	66	1.20
144714--144946	4	58.2	4	68	21	66	23	4	0	71	1.07
144642--144777	39	3.3	40	76	14	120	27	2	3	65	1.24
144757--144860	30	3.4	28	78	12	91	20	2	0	76	0.90
144675--144848	55	3.4	50	75	14	158	24	2	1	70	1.10
147912--147952	10	4.1	10	87	9	57	87	2	9	0	0.62
147907--147941	17	1.9	17	88	11	52	88	2	8	0	0.61
147907--147952	18	2.4	18	85	10	56	84	4	10	0	0.75
147913--147952	15	2.7	15	84	0	53	87	2	10	0	0.63
149521--149639	43	2.8	44	82	7	129	33	27	15	23	1.95
149784--150027	124	2.0	124	84	1	319	32	24	18	24	1.97
150085--150177	36	2.6	36	84	5	98	26	21	12	38	1.90
150110--150542	36	12.1	36	70	14	254	26	18	13	42	1.87
150110--150542	216	2.0	212	90	2	670	26	18	13	42	1.87
150428--150542	37	3.1	37	82	3	135	27	20	14	37	1.92
150492--150643	67	2.2	67	81	6	171	31	19	11	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151223--151332	37	3.0	37	95	0	193	39	13	16	30	1.87
151892--151991	39	2.5	41	80	8	116	30	3	3	64	1.24
151931--152029	48	2.1	47	83	5	119	30	2	2	65	1.15
152031--152073	10	4.3	10	88	8	61	6	11	0	81	0.87
152040--152073	11	3.2	11	95	4	61	8	8	0	82	0.85
152083--152121	20	2.0	20	89	0	60	12	20	0	66	1.24
152990--153143	36	4.2	36	88	4	238	38	18	14	29	1.90
152990--153143	73	2.1	72	88	4	238	38	18	14	29	1.90
156055--156102	23	2.0	25	88	8	73	41	41	12	4	1.62
156055--156093	12	3.3	12	82	7	53	43	46	7	2	1.46

Tables:   1   2