genome.fa.s9073.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009073.1 Hibiscus syriacus cultivar Beakdansim tig00112505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  329414

Tables:   1   2   

This is table  2  of  2  ( 166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175684--175731	23	2.1	23	100	0	96	43	31	4	20	1.71
175713--175920	101	2.0	104	90	3	332	30	19	13	36	1.91
176841--176875	18	1.9	18	88	0	52	42	17	11	28	1.83
181690--181758	23	3.1	23	75	12	63	56	1	1	40	1.17
183350--183424	39	1.9	39	94	0	132	24	10	32	33	1.89
183423--183498	31	2.4	31	95	2	134	19	18	15	46	1.85
183647--183709	2	31.5	2	100	0	126	50	0	0	49	1.00
193821--193862	20	2.1	20	86	0	57	23	11	26	38	1.90
200586--200647	23	2.7	23	92	2	99	22	32	25	19	1.97
202239--202273	18	1.9	18	88	0	52	42	31	22	2	1.68
209490--209659	46	3.8	46	90	3	249	31	22	7	37	1.83
209746--209821	40	1.9	40	86	0	107	23	25	25	26	2.00
213890--213972	13	6.3	14	76	22	74	42	2	1	54	1.21
213897--213974	3	26.7	3	74	10	63	41	2	1	55	1.22
213897--213974	11	7.2	11	77	11	72	41	2	1	55	1.22
230401--230468	20	3.5	19	81	15	86	45	2	13	38	1.58
233922--233964	19	2.3	19	100	0	86	18	13	16	51	1.77
239310--239401	26	3.6	26	69	16	75	52	6	35	5	1.51
239304--239399	51	1.9	50	85	10	133	53	6	35	5	1.49
239389--239445	19	2.9	19	78	2	60	66	1	31	0	1.02
241790--241824	2	17.5	2	100	0	70	48	0	0	51	1.00
241879--242092	85	2.5	85	84	4	281	32	18	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242071--242110	13	3.0	13	85	3	53	30	12	22	35	1.91
246294--246327	15	2.4	14	90	5	50	52	0	2	44	1.16
256383--256419	18	2.1	18	89	0	56	37	2	5	54	1.38
262802--262854	23	2.3	23	93	3	90	24	30	20	24	1.99
268080--268501	117	3.5	122	84	12	520	38	4	7	50	1.50
283313--283345	14	2.3	15	85	15	52	42	12	15	30	1.83
284354--284393	12	3.6	12	80	19	59	55	10	7	27	1.60
284351--284393	21	2.0	21	100	0	86	53	9	9	27	1.63
284801--284850	22	2.2	23	85	3	66	28	26	28	18	1.98
288631--288670	21	1.9	20	85	10	53	35	7	5	52	1.51
292325--292359	8	4.4	8	100	0	70	62	14	22	0	1.31
305658--305695	20	1.9	20	94	0	67	31	31	26	10	1.90
311281--311320	18	2.2	18	95	0	71	22	10	27	40	1.86
311656--311771	9	12.2	9	70	22	62	55	6	0	37	1.31
311615--311770	7	22.1	7	70	19	69	55	6	1	37	1.34
311672--311759	28	3.1	28	78	15	85	53	7	1	37	1.38
311625--311770	75	1.9	76	81	9	174	54	6	1	37	1.36
316359--316413	25	2.2	24	78	12	58	32	1	1	63	1.15
319066--319140	24	3.1	24	100	0	150	8	29	37	25	1.84
321434--321511	21	3.7	20	64	16	50	23	35	15	25	1.94
321382--321515	42	3.2	42	83	0	178	23	35	19	21	1.96
321382--321532	42	3.6	42	82	0	176	23	35	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321508--321551	21	2.1	22	87	8	65	27	36	18	18	1.94
321816--321842	3	9.0	3	100	0	54	33	0	33	33	1.58

Tables:   1   2

The End!