genome.fa.s9079.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009079.1 Hibiscus syriacus cultivar Beakdansim tig00112518_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  283420

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214493--214527	3	11.7	3	93	0	61	2	34	0	62	1.10
215063--215286	64	3.5	63	83	3	252	33	19	18	27	1.96
215942--216083	31	4.6	31	90	0	221	21	19	19	40	1.91
219205--219428	64	3.5	64	80	6	215	33	20	19	26	1.96
220084--220270	31	6.0	31	96	1	331	19	18	22	39	1.93
221129--221284	60	2.6	60	77	6	145	29	20	7	42	1.78
221418--221578	60	2.7	60	80	1	189	41	4	19	34	1.73
232602--232750	30	5.0	30	74	3	84	34	20	29	14	1.93
235531--235584	3	18.0	3	100	0	108	66	0	0	33	0.92
235966--236010	20	2.2	20	80	0	54	31	17	20	31	1.96
235966--236472	119	4.3	119	94	0	879	32	18	15	32	1.93
236194--236248	20	2.8	20	74	0	56	30	20	20	29	1.97
235718--236472	238	3.2	238	89	3	1163	32	18	15	33	1.92
236314--236368	20	2.8	20	80	0	56	32	18	21	27	1.96
237898--238033	51	2.7	50	83	4	182	20	19	19	39	1.92
238375--238441	28	2.4	28	95	5	118	17	22	17	41	1.90
239365--239425	10	5.6	10	76	14	50	0	18	1	80	0.80
239363--239424	18	3.5	17	80	10	72	0	17	1	80	0.79
239364--239423	27	2.2	27	82	11	70	0	18	1	80	0.80
242680--242724	20	2.2	20	96	4	81	17	24	8	48	1.75
245674--245749	37	2.1	37	94	0	134	57	3	1	36	1.25
250362--250448	10	8.8	10	73	20	51	75	0	17	6	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250363--250510	19	7.9	19	72	20	68	73	0	19	6	1.05
250364--250417	21	2.6	21	82	8	67	77	0	11	11	0.99
250362--250511	69	2.1	70	79	9	164	73	0	20	6	1.05
250363--250505	18	7.8	17	71	20	76	73	0	20	6	1.05
250461--250510	15	3.3	15	86	8	66	76	0	16	8	1.02
251783--251891	36	3.0	37	87	1	157	38	19	20	22	1.93
251894--252376	55	8.9	55	82	7	535	29	15	24	30	1.96
251909--252376	110	4.3	110	86	5	601	29	16	24	29	1.96
251909--252340	161	2.6	165	82	6	522	29	16	24	29	1.96
253538--253580	16	2.7	16	100	0	86	18	4	18	58	1.56
255408--255458	25	2.0	25	100	0	102	45	19	27	7	1.78
256463--256505	21	2.1	20	86	4	59	32	4	2	60	1.30
257853--257902	16	3.2	16	66	11	50	38	6	8	48	1.57
257838--257911	30	2.5	30	97	0	139	44	6	6	41	1.57
262775--262954	41	4.4	41	98	0	342	19	18	24	37	1.94
262841--263056	102	2.1	102	95	1	389	15	21	24	38	1.92
262943--263084	41	3.4	41	90	4	232	14	22	23	38	1.92
262820--263078	82	3.1	82	86	3	299	16	20	24	37	1.94
262942--263101	82	2.0	81	91	5	259	15	20	23	40	1.91
263177--263225	6	8.7	6	97	2	77	28	53	18	0	1.45
263724--263774	6	8.5	6	100	0	102	0	15	50	33	1.44
263771--263807	6	6.2	6	100	0	74	32	0	32	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263729--263804	12	6.3	12	93	0	62	13	9	43	34	1.75
264001--264087	21	4.2	21	70	2	68	37	27	17	17	1.92
264516--264551	2	18.0	2	91	0	54	50	2	2	44	1.31
266176--266287	14	8.0	14	73	7	93	23	0	25	51	1.48
266181--266296	35	3.3	35	82	9	146	23	0	24	52	1.47
266576--266612	19	2.1	18	85	14	51	62	16	5	16	1.51
268861--268899	17	2.3	17	95	0	69	23	15	30	30	1.95
269000--269060	31	2.0	31	90	0	95	21	14	21	42	1.88
270640--270674	17	1.9	19	88	11	56	54	0	5	40	1.24
270650--270695	15	2.9	15	84	15	58	56	0	2	41	1.11
274264--274298	2	17.5	2	87	0	52	51	0	5	42	1.25
274672--274764	43	2.2	43	88	0	132	34	13	20	31	1.92
274801--274991	42	4.5	42	86	3	242	18	16	26	37	1.92
274767--274999	85	2.7	86	80	10	264	19	17	24	38	1.93
274747--274991	43	5.8	42	79	8	239	20	18	25	35	1.95
275418--275477	21	2.9	21	79	0	66	1	33	23	41	1.64

Tables:   1   2

The End!