genome.fa.s9088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009088.1 Hibiscus syriacus cultivar Beakdansim tig00112532_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  200037

Tables:   1   2   

This is table  1  of  2  ( 174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3250--3281	15	2.1	15	94	0	55	25	18	9	46	1.79
10560--10623	21	3.0	20	82	8	74	81	0	17	1	0.77
10561--10622	25	2.5	24	81	2	70	83	0	14	1	0.71
10562--10622	22	2.7	22	85	14	81	83	0	14	1	0.72
10562--10622	10	5.6	10	75	24	61	83	0	14	1	0.72
11988--12399	83	4.7	84	85	10	567	28	13	21	37	1.91
12040--12430	95	4.3	93	87	6	540	31	13	20	35	1.91
12046--12400	187	1.9	178	90	5	566	29	12	21	36	1.90
12125--12430	92	3.3	92	87	2	391	31	13	20	34	1.91
13115--14015	113	8.0	113	93	1	1389	38	14	18	28	1.90
13729--13773	24	1.9	23	82	13	56	51	6	24	17	1.70
13980--14163	84	2.2	82	84	5	228	37	17	18	26	1.93
14321--14401	3	27.7	3	90	7	123	30	0	1	67	0.98
15843--15887	24	2.0	23	86	8	65	48	0	2	48	1.13
18140--18268	30	4.3	30	93	2	199	31	24	22	21	1.99
18140--18293	60	2.6	60	85	4	195	31	25	22	20	1.98
18250--18318	31	2.2	31	87	5	95	34	21	21	21	1.97
19530--19574	21	2.1	21	87	0	63	15	24	28	31	1.96
23214--23287	3	24.7	3	80	5	87	28	0	2	68	1.03
24791--24837	25	2.0	23	87	8	67	46	0	2	51	1.13
24790--24844	25	2.4	22	82	11	65	47	0	1	50	1.11
28634--28665	15	2.1	15	94	0	55	25	18	9	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35986--36052	22	3.0	21	79	14	73	83	0	14	1	0.72
35987--36051	13	5.3	12	80	8	78	86	0	12	1	0.65
35986--36051	23	2.8	24	81	11	82	84	0	13	1	0.68
37474--37865	92	4.3	92	88	6	536	31	13	20	35	1.91
37422--37865	83	5.0	89	88	6	581	29	13	20	36	1.91
38552--39454	113	8.0	113	93	0	1398	38	14	18	28	1.90
39166--39210	24	1.9	23	82	13	56	48	6	24	20	1.73
39419--39602	84	2.2	82	84	5	228	37	17	18	26	1.93
39765--39850	3	28.7	3	90	4	129	31	0	2	66	1.04
41336--41382	25	2.0	23	87	8	67	46	0	2	51	1.13
41335--41389	25	2.4	22	82	11	65	47	0	1	50	1.11
43646--43775	30	4.3	30	94	1	208	30	25	22	21	1.99
43700--43825	31	4.1	31	87	3	103	33	23	21	22	1.97
45042--45086	21	2.1	21	91	0	72	15	22	28	33	1.95
50693--50876	94	2.0	94	93	0	314	38	5	30	25	1.78
51864--51930	23	3.2	23	61	30	58	34	13	25	26	1.93
51855--51936	40	2.0	40	97	0	155	35	15	25	23	1.94
52788--52825	9	4.2	9	93	0	58	0	71	0	28	0.87
52991--53022	16	2.0	16	93	0	55	28	0	25	46	1.53
53789--53855	31	2.2	31	94	0	116	41	14	5	37	1.71
55866--55949	44	1.9	44	95	2	152	28	26	19	26	1.98
57103--57177	32	2.2	32	83	11	87	49	1	0	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57097--57164	17	3.8	17	73	15	57	51	2	0	45	1.16
57153--57195	21	2.0	21	86	8	61	51	0	0	48	1.00
58360--58389	2	15.0	2	100	0	60	50	0	0	50	1.00
58402--58751	33	10.1	33	75	18	243	45	4	7	43	1.50
58482--58542	27	2.4	25	80	5	77	45	3	3	47	1.35
58457--58712	70	3.8	63	78	14	178	44	3	6	45	1.45
58520--58830	70	4.4	67	77	15	229	44	2	8	44	1.48
58520--58876	33	9.8	39	74	11	121	44	2	8	44	1.48
58520--58829	33	8.7	34	79	15	256	44	2	8	44	1.48
58883--58931	3	16.0	3	91	4	80	32	2	0	65	1.04
60028--60083	23	2.5	22	81	13	69	25	1	3	69	1.14
60033--60080	20	2.4	20	80	16	55	25	2	4	68	1.18
60140--60185	5	9.4	5	77	13	51	21	0	2	76	0.90
61757--61842	21	4.1	21	70	7	59	17	17	27	37	1.92
61812--61861	22	2.3	22	92	0	82	16	16	30	38	1.90
62455--62479	6	4.2	6	100	0	50	0	16	48	36	1.46
62561--62613	27	2.0	27	96	0	97	39	22	22	15	1.91
62627--62674	19	2.5	19	96	0	87	41	20	18	18	1.90
62590--62754	60	2.7	60	87	7	219	40	21	20	17	1.91
62689--62735	20	2.3	20	85	0	67	44	21	23	10	1.83
65825--66156	135	2.5	129	83	5	412	23	32	11	32	1.90
67234--67281	25	2.0	24	91	4	78	25	14	12	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67615--67678	4	16.0	4	73	0	56	4	21	45	28	1.72
67619--67677	20	3.0	20	87	0	91	5	22	44	28	1.74
70169--70230	10	6.4	9	73	12	52	16	27	29	27	1.97
70164--70206	20	2.2	20	87	8	61	13	27	25	32	1.94
70175--70236	19	3.3	19	82	13	74	17	25	27	29	1.98
70235--70288	5	10.8	5	84	11	67	20	53	22	3	1.61
70248--70295	22	2.2	22	96	0	87	20	50	20	8	1.74
77518--77585	27	2.5	26	86	6	100	22	47	19	11	1.81
77559--77592	17	2.0	17	94	0	59	20	47	20	11	1.81
77537--77580	12	3.4	12	77	17	52	22	45	18	13	1.84
83915--83959	21	2.1	21	84	8	56	33	0	2	64	1.06
83983--84023	19	2.3	17	88	12	64	39	4	0	56	1.21
83980--84048	27	2.7	26	78	13	72	37	5	1	55	1.33
83980--84054	28	2.6	29	78	6	89	38	6	1	53	1.36
86818--86965	71	2.0	73	87	7	210	41	16	23	18	1.90
87060--87099	20	2.0	21	85	5	55	37	0	0	62	0.95
89258--89299	2	21.0	2	100	0	84	50	0	0	50	1.00
90741--90958	64	3.4	63	77	9	201	32	21	18	27	1.97
91266--91301	12	3.0	12	87	0	54	33	8	25	33	1.86
91313--91390	29	2.7	28	94	2	129	43	14	21	20	1.87
98333--98495	65	2.5	64	82	3	211	26	15	26	30	1.96
98443--98493	19	2.7	19	85	8	70	25	15	35	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99150--99193	18	2.5	17	82	7	61	54	27	0	18	1.44
99161--99197	18	2.0	19	94	5	67	59	27	0	13	1.35
106931--107093	65	2.5	64	84	3	220	26	15	26	30	1.96
107041--107091	19	2.7	19	85	8	70	25	15	35	23	1.94
106935--107142	65	3.2	65	81	12	207	26	16	25	30	1.97
107495--107546	19	2.7	19	100	0	104	28	17	30	23	1.97
107432--107611	83	2.2	83	82	2	209	31	21	21	25	1.98
107918--107953	12	3.0	12	91	0	63	33	5	25	36	1.79
107965--108042	29	2.7	28	96	2	138	44	14	21	19	1.85
108228--108259	15	2.1	15	94	0	55	15	21	34	28	1.94
110704--110738	12	2.9	12	86	0	52	20	28	5	45	1.73
111046--111094	24	2.1	22	82	14	55	53	6	6	34	1.51
115366--115398	6	5.5	6	92	0	57	30	33	0	36	1.58
116297--116322	2	13.0	2	100	0	52	50	0	0	50	1.00
123332--123362	15	2.1	15	93	0	53	64	6	0	29	1.18
124965--125037	23	3.2	23	88	0	101	38	19	5	36	1.75
124520--126735	489	4.6	489	93	3	3774	40	10	7	41	1.67
125454--125503	23	2.2	23	92	0	82	38	22	6	34	1.78
125521--125565	22	2.1	21	87	4	63	44	8	4	42	1.56
125914--125986	23	3.2	23	88	0	110	38	20	5	35	1.76
124134--126735	949	2.7	953	92	3	4195	40	10	7	41	1.67
126405--126475	23	3.1	23	91	0	115	39	22	4	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126492--126540	22	2.3	23	79	13	59	34	10	16	38	1.82
125454--126735	483	2.6	485	96	0	2343	40	10	7	41	1.68
129375--129619	120	2.0	120	93	0	418	38	15	12	33	1.85
129210--129804	303	2.0	303	96	0	1091	34	16	14	34	1.89
129495--130083	183	3.2	183	95	1	1020	34	16	14	34	1.89
132743--133506	200	3.8	200	95	0	1341	30	18	14	36	1.91
133727--133787	19	3.3	18	88	2	59	52	11	1	34	1.47
133739--133787	19	2.6	19	96	0	89	55	10	2	32	1.45
135675--135739	21	3.1	21	88	0	94	16	29	10	43	1.82
137964--138010	20	2.4	19	79	10	58	21	17	8	53	1.70

Tables:   1   2